Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-500 |
| Cow position: | chr14:19654199-19654705 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 1-543 |
| Cow position: | chr14:25886270-25885711 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 31 |
| Conread position: | 1-544 |
| Cow position: | chr14:33834861-33834305 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 1-547 |
| Cow position: | chr14:12243626-12244174 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 1-555 |
| Cow position: | chr14:44382426-44382999 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 336 |
| Conread position: | 1-563 |
| Cow position: | chr14:9020794-9020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 94 |
| Conread position: | 1-569 |
| Cow position: | chr14:12483546-12484115 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 327 |
| Conread position: | 1-572 |
| Cow position: | chr14:46489490-46490072 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 210 |
| Conread position: | 1-574 |
| Cow position: | chr14:18811361-18811938 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 60 |
| Conread position: | 1-574 |
| Cow position: | chr14:34675246-34675835 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 333 |
| Conread position: | 1-574 |
| Cow position: | chr14:35420008-35420577 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 90 |
| Conread position: | 2-422 |
| Cow position: | chr14:37677524-37677945 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 2-574 |
| Cow position: | chr14:13582014-13582577 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 2-574 |
| Cow position: | chr14:18940548-18941119 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 243 |
| Conread position: | 3-451 |
| Cow position: | chr14:46331470-46331010 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 3-563 |
| Cow position: | chr14:12545831-12546395 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 192 |
| Conread position: | 3-573 |
| Cow position: | chr14:16525638-16525060 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 4-444 |
| Cow position: | chr14:33791971-33791523 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 217 |
| Conread position: | 4-565 |
| Cow position: | chr14:48572203-48571625 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 327 |
| Conread position: | 4-574 |
| Cow position: | chr14:7647275-7647858 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 167 |
| Conread position: | 30-555 |
| Cow position: | chr14:46736058-46735512 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 304 |
| Conread position: | 36-558 |
| Cow position: | chr14:13722867-13723402 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 188 |
| Conread position: | 37-438 |
| Cow position: | chr14:12857381-12856959 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 310 |
| Conread position: | 42-574 |
| Cow position: | chr14:7599484-7600036 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 162 |
| Conread position: | 54-555 |
| Cow position: | chr14:19189756-19189239 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 287 |
| Conread position: | 70-455 |
| Cow position: | chr14:34984543-34984136 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 77-451 |
| Cow position: | chr14:34354791-34355184 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 79-574 |
| Cow position: | chr14:28988399-28987876 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 271 |
| Conread position: | 92-574 |
| Cow position: | chr14:30760879-30760389 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 131-555 |
| Cow position: | chr14:28379003-28378565 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 206 |
| Conread position: | 131-574 |
| Cow position: | chr14:20666387-20666840 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 198 |
| Conread position: | 138-430 |
| Cow position: | chr14:44847235-44847542 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 218 |
| Conread position: | 138-563 |
| Cow position: | chr14:20640001-20640432 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 190 |
| Conread position: | 139-463 |
| Cow position: | chr14:12519707-12520040 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 140-558 |
| Cow position: | chr14:20068904-20069324 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 191 |
| Conread position: | 149-552 |
| Cow position: | chr14:8488807-8488387 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 177 |
| Conread position: | 154-574 |
| Cow position: | chr14:5501542-5501971 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 172 |
| Conread position: | 154-574 |
| Cow position: | chr14:38295681-38296095 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 178 |
| Conread position: | 164-390 |
| Cow position: | chr14:1867768-1867995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 193-574 |
| Cow position: | chr14:27792106-27791711 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 203-509 |
| Cow position: | chr14:19887499-19887817 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 204-552 |
| Cow position: | chr14:39327305-39327663 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 215-552 |
| Cow position: | chr14:23056152-23055808 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 220-539 |
| Cow position: | chr14:14621655-14621968 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 224-563 |
| Cow position: | chr14:22982426-22982076 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 226-574 |
| Cow position: | chr14:27865600-27865951 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 260-449 |
| Cow position: | chr14:5836425-5836240 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 260-450 |
| Cow position: | chr14:19851203-19851387 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 260-471 |
| Cow position: | chr14:23591897-23591693 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-574 |
| Cow position: | chr14:20600875-20600563 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 260-574 |
| Cow position: | chr14:25403458-25403762 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-574 |
| Cow position: | chr14:41454044-41454351 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 264-552 |
| Cow position: | chr14:39779231-39778956 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-552 |
| Cow position: | chr14:47584164-47584446 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 266-558 |
| Cow position: | chr14:35588636-35588355 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 269-552 |
| Cow position: | chr14:12991249-12991526 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 270-528 |
| Cow position: | chr14:28708506-28708259 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 274-574 |
| Cow position: | chr14:34667119-34666826 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 37 |
Show alignments to all cow chromosomes.