Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-500
Cow position:
Alignm length: 523
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 46

Conread position: 1-543
Cow position:
Alignm length: 569
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 31

Conread position: 1-544
Cow position:
Alignm length: 568
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 65

Conread position: 1-547
Cow position:
Alignm length: 572
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 28

Conread position: 1-555
Cow position:
Alignm length: 581
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 336

Conread position: 1-563
Cow position:
Alignm length: 583
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 94

Conread position: 1-569
Cow position:
Alignm length: 590
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 327

Conread position: 1-572
Cow position:
Alignm length: 595
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 210

Conread position: 1-574
Cow position:
Alignm length: 598
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 60

Conread position: 1-574
Cow position:
Alignm length: 598
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 1-574
Cow position:
Alignm length: 585
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 90

Conread position: 2-422
Cow position:
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 50

Conread position: 2-574
Cow position:
Alignm length: 590
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 133

Conread position: 2-574
Cow position:
Alignm length: 593
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 243

Conread position: 3-451
Cow position:
Alignm length: 471
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 28

Conread position: 3-563
Cow position:
Alignm length: 582
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 192

Conread position: 3-573
Cow position:
Alignm length: 599
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 86

Conread position: 4-444
Cow position:
Alignm length: 456
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 217

Conread position: 4-565
Cow position:
Alignm length: 585
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 327

Conread position: 4-574
Cow position:
Alignm length: 585
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 167

Conread position: 30-555
Cow position:
Alignm length: 555
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 304

Conread position: 36-558
Cow position:
Alignm length: 545
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 188

Conread position: 37-438
Cow position:
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 310

Conread position: 42-574
Cow position:
Alignm length: 557
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 162

Conread position: 54-555
Cow position:
Alignm length: 528
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 287

Conread position: 70-455
Cow position:
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 131

Conread position: 77-451
Cow position:
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 88

Conread position: 79-574
Cow position:
Alignm length: 535
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 271

Conread position: 92-574
Cow position:
Alignm length: 498
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 68

Conread position: 131-555
Cow position:
Alignm length: 449
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 206

Conread position: 131-574
Cow position:
Alignm length: 464
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 198

Conread position: 138-430
Cow position:
Alignm length: 310
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 218

Conread position: 138-563
Cow position:
Alignm length: 440
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 190

Conread position: 139-463
Cow position:
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 60

Conread position: 140-558
Cow position:
Alignm length: 426
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 191

Conread position: 149-552
Cow position:
Alignm length: 425
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 177

Conread position: 154-574
Cow position:
Alignm length: 436
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 172

Conread position: 154-574
Cow position:
Alignm length: 437
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 178

Conread position: 164-390
Cow position:
Alignm length: 232
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 35

Conread position: 193-574
Cow position:
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 134

Conread position: 203-509
Cow position:
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 8

Conread position: 204-552
Cow position:
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 121

Conread position: 215-552
Cow position:
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 112

Conread position: 220-539
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 15

Conread position: 224-563
Cow position:
Alignm length: 352
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 99

Conread position: 226-574
Cow position:
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 100

Conread position: 260-449
Cow position:
Alignm length: 190
Alignm identity: 130
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 260-450
Cow position:
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 51

Conread position: 260-471
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 260-574
Cow position:
Alignm length: 315
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 260-574
Cow position:
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 117, 49

Conread position: 264-552
Cow position:
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 264-552
Cow position:
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 266-558
Cow position:
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 269-552
Cow position:
Alignm length: 284
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 0

Conread position: 270-528
Cow position:
Alignm length: 261
Alignm identity: 192
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 108, 46

Conread position: 274-574
Cow position:
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 37

Show alignments to all cow chromosomes.