Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-500 |
| Cow position: | chr15:25908041-25907535 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 1-517 |
| Cow position: | chr15:1776315-1776854 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 16 |
| Conread position: | 1-552 |
| Cow position: | chr15:6648259-6647695 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 1-552 |
| Cow position: | chr15:6959848-6960416 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 331 |
| Conread position: | 1-552 |
| Cow position: | chr15:20458485-20459051 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 330 |
| Conread position: | 1-557 |
| Cow position: | chr15:18661638-18662208 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 196 |
| Conread position: | 1-558 |
| Cow position: | chr15:31357448-31356875 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 1-563 |
| Cow position: | chr15:1329300-1329861 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 65 |
| Conread position: | 1-565 |
| Cow position: | chr15:3007687-3007109 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 164 |
| Conread position: | 1-574 |
| Cow position: | chr15:22752277-22751682 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 357 |
| Conread position: | 1-574 |
| Cow position: | chr15:37382435-37381858 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 328 |
| Conread position: | 2-435 |
| Cow position: | chr15:36355588-36355137 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 335 |
| Conread position: | 2-444 |
| Cow position: | chr15:5460977-5461437 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 2-513 |
| Cow position: | chr15:13076677-13077201 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 332 |
| Conread position: | 2-547 |
| Cow position: | chr15:51632236-51632796 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 183 |
| Conread position: | 3-540 |
| Cow position: | chr15:21902633-21903188 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 3-554 |
| Cow position: | chr15:33228905-33228329 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 336 |
| Conread position: | 3-565 |
| Cow position: | chr15:4918261-4918815 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 228 |
| Conread position: | 4-552 |
| Cow position: | chr15:24968601-24968042 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 335 |
| Conread position: | 4-555 |
| Cow position: | chr15:35041063-35041624 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 179 |
| Conread position: | 8-552 |
| Cow position: | chr15:62612-63173 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 324 |
| Conread position: | 12-573 |
| Cow position: | chr15:6530032-6530615 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 324 |
| Conread position: | 16-563 |
| Cow position: | chr15:1082601-1083136 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 20 |
| Conread position: | 20-552 |
| Cow position: | chr15:34894886-34895434 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 315 |
| Conread position: | 22-574 |
| Cow position: | chr15:15040644-15041208 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 47-547 |
| Cow position: | chr15:24617340-24616821 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 293 |
| Conread position: | 74-552 |
| Cow position: | chr15:13669165-13669654 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 258 |
| Conread position: | 100-552 |
| Cow position: | chr15:6226503-6226949 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 131-531 |
| Cow position: | chr15:10441912-10442321 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 194 |
| Conread position: | 138-552 |
| Cow position: | chr15:47842588-47843009 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 138-574 |
| Cow position: | chr15:23703439-23703000 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 194 |
| Conread position: | 138-574 |
| Cow position: | chr15:30046862-30047312 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 138-574 |
| Cow position: | chr15:38899093-38898652 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 145-513 |
| Cow position: | chr15:49258735-49258360 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 180 |
| Conread position: | 149-552 |
| Cow position: | chr15:22168725-22168307 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 178 |
| Conread position: | 149-554 |
| Cow position: | chr15:41583575-41583157 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 150-563 |
| Cow position: | chr15:1128644-1128233 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 152-550 |
| Cow position: | chr15:33976056-33976442 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 155-547 |
| Cow position: | chr15:24044437-24044844 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 173 |
| Conread position: | 169-444 |
| Cow position: | chr15:16927410-16927695 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 169-569 |
| Cow position: | chr15:237377-236963 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 169-572 |
| Cow position: | chr15:50957151-50957566 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 181-574 |
| Cow position: | chr15:29476203-29475801 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 185-438 |
| Cow position: | chr15:21894442-21894182 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 185-494 |
| Cow position: | chr15:33511470-33511151 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 144 |
| Conread position: | 214-455 |
| Cow position: | chr15:24993911-24994156 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 214-554 |
| Cow position: | chr15:19403570-19403228 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 240 |
| Conread position: | 260-438 |
| Cow position: | chr15:19771962-19771790 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-444 |
| Cow position: | chr15:35643011-35642833 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-574 |
| Cow position: | chr15:42143384-42143082 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 149, 48 |
| Conread position: | 264-523 |
| Cow position: | chr15:52148749-52148496 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 264-543 |
| Cow position: | chr15:276274-276012 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 264-554 |
| Cow position: | chr15:32878026-32878315 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 264-562 |
| Cow position: | chr15:5692242-5691953 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 47 |
| Conread position: | 271-552 |
| Cow position: | chr15:39082723-39082450 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 291-563 |
| Cow position: | chr15:23265048-23265309 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 22 |
Show alignments to all cow chromosomes.