Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-465 |
| Cow position: | chr16:2963053-2962572 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 333 |
| Conread position: | 1-465 |
| Cow position: | chr16:7673574-7673098 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 180 |
| Conread position: | 1-484 |
| Cow position: | chr16:49096768-49097268 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-528 |
| Cow position: | chr16:49253458-49252925 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 1-550 |
| Cow position: | chr16:16095999-16096578 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 362 |
| Conread position: | 1-552 |
| Cow position: | chr16:25075397-25075965 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-552 |
| Cow position: | chr16:56281995-56281427 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-555 |
| Cow position: | chr16:51042905-51043477 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 348 |
| Conread position: | 1-558 |
| Cow position: | chr16:42970658-42970085 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 332 |
| Conread position: | 1-573 |
| Cow position: | chr16:5350704-5350114 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 330 |
| Conread position: | 1-574 |
| Cow position: | chr16:600224-600807 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 140 |
| Conread position: | 1-574 |
| Cow position: | chr16:7457175-7456602 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 1-574 |
| Cow position: | chr16:49126908-49126322 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 176 |
| Conread position: | 2-544 |
| Cow position: | chr16:39645834-39646386 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 328 |
| Conread position: | 2-574 |
| Cow position: | chr16:46223700-46223099 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 199 |
| Conread position: | 3-476 |
| Cow position: | chr16:45703917-45703425 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 3-547 |
| Cow position: | chr16:22124893-22124332 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 51 |
| Conread position: | 3-552 |
| Cow position: | chr16:11100520-11099957 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 325 |
| Conread position: | 3-558 |
| Cow position: | chr16:18678482-18679043 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 89 |
| Conread position: | 3-558 |
| Cow position: | chr16:42079554-42078996 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 76 |
| Conread position: | 3-568 |
| Cow position: | chr16:24925855-24926438 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 3-574 |
| Cow position: | chr16:4712179-4712763 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 76 |
| Conread position: | 3-574 |
| Cow position: | chr16:51500204-51500797 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 332 |
| Conread position: | 4-475 |
| Cow position: | chr16:42752157-42752642 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 7-552 |
| Cow position: | chr16:45654765-45654194 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 509 |
| Conread position: | 14-552 |
| Cow position: | chr16:30311810-30311270 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 162 |
| Conread position: | 20-552 |
| Cow position: | chr16:11568795-11568274 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 32-552 |
| Cow position: | chr16:47242257-47242792 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 303 |
| Conread position: | 32-565 |
| Cow position: | chr16:47247923-47248470 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 299 |
| Conread position: | 45-519 |
| Cow position: | chr16:49450015-49449543 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 92 |
| Conread position: | 45-552 |
| Cow position: | chr16:29206145-29205619 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 296 |
| Conread position: | 56-554 |
| Cow position: | chr16:51480915-51481429 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 59-552 |
| Cow position: | chr16:28112589-28112081 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 108 |
| Conread position: | 76-562 |
| Cow position: | chr16:31978827-31978337 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 44 |
| Conread position: | 81-455 |
| Cow position: | chr16:53087237-53086841 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 95-543 |
| Cow position: | chr16:23066040-23066500 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 102-563 |
| Cow position: | chr16:55682672-55683144 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 229 |
| Conread position: | 131-375 |
| Cow position: | chr16:53409838-53409589 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 191 |
| Conread position: | 131-455 |
| Cow position: | chr16:29678217-29677896 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 131-537 |
| Cow position: | chr16:42092965-42092551 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 198 |
| Conread position: | 131-552 |
| Cow position: | chr16:24426912-24427344 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 196 |
| Conread position: | 131-558 |
| Cow position: | chr16:8651767-8652203 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 195 |
| Conread position: | 132-451 |
| Cow position: | chr16:37453390-37453065 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 196 |
| Conread position: | 134-550 |
| Cow position: | chr16:41590202-41590617 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 139-494 |
| Cow position: | chr16:50873889-50873525 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 140-459 |
| Cow position: | chr16:16057745-16057406 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 336 |
| Conread position: | 154-553 |
| Cow position: | chr16:41895790-41896185 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 175 |
| Conread position: | 162-574 |
| Cow position: | chr16:40561666-40562089 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 167 |
| Conread position: | 163-554 |
| Cow position: | chr16:37670304-37669888 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 164-558 |
| Cow position: | chr16:33777250-33777664 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 174-547 |
| Cow position: | chr16:18141872-18141495 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 175-565 |
| Cow position: | chr16:28431813-28431407 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 180-558 |
| Cow position: | chr16:18205420-18205817 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 193-555 |
| Cow position: | chr16:50905937-50906310 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 133 |
| Conread position: | 204-563 |
| Cow position: | chr16:4911033-4910680 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 209-574 |
| Cow position: | chr16:23475582-23475955 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 212-574 |
| Cow position: | chr16:19643393-19643755 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 214-444 |
| Cow position: | chr16:19671070-19670827 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 214-465 |
| Cow position: | chr16:56523835-56523591 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 145, 99 |
| Conread position: | 214-558 |
| Cow position: | chr16:5654010-5654354 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 217-565 |
| Cow position: | chr16:39474640-39474285 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 219-465 |
| Cow position: | chr16:29036908-29037153 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 221-555 |
| Cow position: | chr16:48398742-48398403 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 260-444 |
| Cow position: | chr16:33791083-33791261 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-491 |
| Cow position: | chr16:9787134-9787358 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-550 |
| Cow position: | chr16:55308986-55308691 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 260-554 |
| Cow position: | chr16:7256102-7256390 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 178, 49 |
| Conread position: | 260-554 |
| Cow position: | chr16:51710566-51710286 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-574 |
| Cow position: | chr16:17142485-17142794 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 114 |
| Conread position: | 264-440 |
| Cow position: | chr16:15848580-15848411 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-465 |
| Cow position: | chr16:22849665-22849860 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-551 |
| Cow position: | chr16:1815371-1815090 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 264-565 |
| Cow position: | chr16:47773355-47773644 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-574 |
| Cow position: | chr16:33177208-33177511 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.