Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-412 |
| Cow position: | chr17:997812-997402 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 65 |
| Conread position: | 1-455 |
| Cow position: | chr17:36790430-36790891 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 138 |
| Conread position: | 1-465 |
| Cow position: | chr17:2201661-2202142 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 333 |
| Conread position: | 1-465 |
| Cow position: | chr17:10445522-10445998 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 106 |
| Conread position: | 1-480 |
| Cow position: | chr17:25834781-25835277 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-513 |
| Cow position: | chr17:4123435-4122914 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 216 |
| Conread position: | 1-535 |
| Cow position: | chr17:42258236-42258771 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 1-552 |
| Cow position: | chr17:5899206-5898644 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 64 |
| Conread position: | 1-552 |
| Cow position: | chr17:20391138-20391706 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-558 |
| Cow position: | chr17:3131372-3131948 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 1-571 |
| Cow position: | chr17:29471794-29472375 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 334 |
| Conread position: | 1-573 |
| Cow position: | chr17:34317399-34316807 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 1-574 |
| Cow position: | chr17:6263218-6263811 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 336 |
| Conread position: | 2-455 |
| Cow position: | chr17:28359142-28359617 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 93 |
| Conread position: | 2-563 |
| Cow position: | chr17:5748484-5747905 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 2-565 |
| Cow position: | chr17:6081857-6082432 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 34 |
| Conread position: | 2-573 |
| Cow position: | chr17:17240649-17240052 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 2-574 |
| Cow position: | chr17:17221672-17222243 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 3-552 |
| Cow position: | chr17:33289331-33288773 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 4-552 |
| Cow position: | chr17:2006017-2006584 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 31 |
| Conread position: | 5-554 |
| Cow position: | chr17:40105340-40104791 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 63 |
| Conread position: | 5-574 |
| Cow position: | chr17:20233563-20234127 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 15-550 |
| Cow position: | chr17:28539369-28539912 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 44 |
| Conread position: | 26-539 |
| Cow position: | chr17:18201115-18201642 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 66 |
| Conread position: | 26-552 |
| Cow position: | chr17:31232607-31232049 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 192 |
| Conread position: | 35-552 |
| Cow position: | chr17:13144328-13143809 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 36-547 |
| Cow position: | chr17:40802164-40802688 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 140 |
| Conread position: | 42-573 |
| Cow position: | chr17:40771179-40771733 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 294 |
| Conread position: | 45-572 |
| Cow position: | chr17:11638249-11638774 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 65-550 |
| Cow position: | chr17:20847917-20848409 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 71-552 |
| Cow position: | chr17:20358264-20358756 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 261 |
| Conread position: | 93-563 |
| Cow position: | chr17:20800219-20800707 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 243 |
| Conread position: | 129-543 |
| Cow position: | chr17:6565928-6566343 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 131-419 |
| Cow position: | chr17:21115755-21115456 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 76, 194 |
| Conread position: | 131-574 |
| Cow position: | chr17:21874867-21874414 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 132-572 |
| Cow position: | chr17:4602088-4601647 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 67 |
| Conread position: | 137-563 |
| Cow position: | chr17:24549627-24550062 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 137-574 |
| Cow position: | chr17:30664733-30665174 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 111 |
| Conread position: | 138-563 |
| Cow position: | chr17:8926778-8926326 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 139-552 |
| Cow position: | chr17:10009106-10008683 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 186 |
| Conread position: | 139-552 |
| Cow position: | chr17:12059633-12059210 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 143-543 |
| Cow position: | chr17:30539787-30539375 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 186 |
| Conread position: | 154-554 |
| Cow position: | chr17:3388339-3388742 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 161-465 |
| Cow position: | chr17:32280393-32280077 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 165-555 |
| Cow position: | chr17:44862323-44861912 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 171-552 |
| Cow position: | chr17:41029438-41029834 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 172-563 |
| Cow position: | chr17:11102299-11101902 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 259 |
| Conread position: | 175-574 |
| Cow position: | chr17:40405801-40406207 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 177-574 |
| Cow position: | chr17:9176186-9175780 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 183-438 |
| Cow position: | chr17:30712542-30712807 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 144 |
| Conread position: | 185-574 |
| Cow position: | chr17:26230443-26230842 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 187-467 |
| Cow position: | chr17:25341028-25340733 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 191-573 |
| Cow position: | chr17:10529235-10528839 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 137 |
| Conread position: | 217-574 |
| Cow position: | chr17:21038820-21039178 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 221-538 |
| Cow position: | chr17:32994069-32993747 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 221-554 |
| Cow position: | chr17:32989037-32989374 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 226-555 |
| Cow position: | chr17:3154220-3153888 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 258-552 |
| Cow position: | chr17:15318935-15319223 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-548 |
| Cow position: | chr17:34676906-34677190 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 194, 48 |
| Conread position: | 260-552 |
| Cow position: | chr17:3743809-3744095 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-552 |
| Cow position: | chr17:3781630-3781926 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 260-560 |
| Cow position: | chr17:23063310-23063601 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 51 |
| Conread position: | 260-569 |
| Cow position: | chr17:20993447-20993143 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 63 |
| Conread position: | 260-573 |
| Cow position: | chr17:14265958-14265657 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-574 |
| Cow position: | chr17:18266657-18266973 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 51 |
| Conread position: | 261-554 |
| Cow position: | chr17:33934150-33933854 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 203, 48 |
| Conread position: | 261-563 |
| Cow position: | chr17:1410648-1410351 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 48 |
| Conread position: | 261-574 |
| Cow position: | chr17:18494930-18494612 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 130, 62 |
| Conread position: | 264-552 |
| Cow position: | chr17:23517567-23517287 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 264-555 |
| Cow position: | chr17:26764612-26764897 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 275-552 |
| Cow position: | chr17:43178177-43177916 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 275-563 |
| Cow position: | chr17:1493546-1493264 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 36 |
| Conread position: | 277-444 |
| Cow position: | chr17:24787451-24787290 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 278-520 |
| Cow position: | chr17:39857025-39857261 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 130, 0 |
Show alignments to all cow chromosomes.