Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-463 |
| Cow position: | chr18:1955284-1954805 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 335 |
| Conread position: | 1-465 |
| Cow position: | chr18:5536560-5537038 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 1-565 |
| Cow position: | chr18:42966077-42966674 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 329 |
| Conread position: | 1-574 |
| Cow position: | chr18:7076012-7076594 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 1-574 |
| Cow position: | chr18:7649237-7649823 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 164 |
| Conread position: | 1-574 |
| Cow position: | chr18:43563467-43564057 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 86 |
| Conread position: | 2-547 |
| Cow position: | chr18:13508483-13507929 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 2-574 |
| Cow position: | chr18:54033296-54033868 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 60 |
| Conread position: | 3-440 |
| Cow position: | chr18:36233281-36232835 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 38 |
| Conread position: | 3-455 |
| Cow position: | chr18:36648978-36649438 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 212, 133 |
| Conread position: | 3-574 |
| Cow position: | chr18:22790821-22790245 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 79 |
| Conread position: | 5-572 |
| Cow position: | chr18:11866616-11867174 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 90 |
| Conread position: | 14-574 |
| Cow position: | chr18:28658653-28658084 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 21-562 |
| Cow position: | chr18:19645434-19645994 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 169 |
| Conread position: | 23-573 |
| Cow position: | chr18:45978977-45979524 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 41-555 |
| Cow position: | chr18:19116180-19115644 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 297 |
| Conread position: | 42-563 |
| Cow position: | chr18:9089004-9089520 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 92 |
| Conread position: | 48-464 |
| Cow position: | chr18:268762-268332 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 288 |
| Conread position: | 49-552 |
| Cow position: | chr18:29768198-29768721 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 196 |
| Conread position: | 51-502 |
| Cow position: | chr18:32283158-32283630 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 287 |
| Conread position: | 51-574 |
| Cow position: | chr18:32284677-32285218 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 287 |
| Conread position: | 51-574 |
| Cow position: | chr18:32300823-32301363 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 286 |
| Conread position: | 58-533 |
| Cow position: | chr18:48450965-48451458 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 287 |
| Conread position: | 70-565 |
| Cow position: | chr18:31309431-31309943 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 262 |
| Conread position: | 77-552 |
| Cow position: | chr18:42422089-42421597 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 255 |
| Conread position: | 83-563 |
| Cow position: | chr18:50638130-50637644 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 74 |
| Conread position: | 85-572 |
| Cow position: | chr18:8967328-8967826 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 251 |
| Conread position: | 88-547 |
| Cow position: | chr18:33605981-33606435 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 89-435 |
| Cow position: | chr18:10097487-10097857 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 93-574 |
| Cow position: | chr18:7955480-7955971 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 242 |
| Conread position: | 95-574 |
| Cow position: | chr18:32218919-32218427 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 239 |
| Conread position: | 111-552 |
| Cow position: | chr18:1611112-1611570 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 221 |
| Conread position: | 131-441 |
| Cow position: | chr18:249507-249179 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 131-563 |
| Cow position: | chr18:37024181-37023738 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 200 |
| Conread position: | 132-550 |
| Cow position: | chr18:33756265-33756684 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 135-552 |
| Cow position: | chr18:9007544-9007956 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 139-558 |
| Cow position: | chr18:13292893-13293323 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 194 |
| Conread position: | 139-558 |
| Cow position: | chr18:23700483-23700055 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 140-436 |
| Cow position: | chr18:24635408-24635718 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 151-480 |
| Cow position: | chr18:19760908-19761242 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 156-552 |
| Cow position: | chr18:37691194-37690803 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 171 |
| Conread position: | 159-444 |
| Cow position: | chr18:23137812-23137512 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 159-552 |
| Cow position: | chr18:27798400-27797997 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 166 |
| Conread position: | 165-558 |
| Cow position: | chr18:52899478-52899881 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 157 |
| Conread position: | 170-550 |
| Cow position: | chr18:24342040-24342432 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 185-455 |
| Cow position: | chr18:11680122-11680403 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 187-430 |
| Cow position: | chr18:44484608-44484366 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 187-554 |
| Cow position: | chr18:24712242-24711861 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 29, 267 |
| Conread position: | 194-563 |
| Cow position: | chr18:37002075-37002448 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 201-558 |
| Cow position: | chr18:13173079-13172708 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 203-450 |
| Cow position: | chr18:25206845-25206592 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 206-574 |
| Cow position: | chr18:28101093-28101457 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 214-451 |
| Cow position: | chr18:48291417-48291174 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 214-471 |
| Cow position: | chr18:29759180-29759453 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 214-552 |
| Cow position: | chr18:40203332-40202991 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 214-555 |
| Cow position: | chr18:51756572-51756906 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 214-563 |
| Cow position: | chr18:51191290-51190936 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 214-574 |
| Cow position: | chr18:23631116-23630748 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 215-574 |
| Cow position: | chr18:22065904-22065533 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 222-552 |
| Cow position: | chr18:56168438-56168112 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 231-457 |
| Cow position: | chr18:10890735-10890966 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 235-552 |
| Cow position: | chr18:49655204-49655522 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 260-513 |
| Cow position: | chr18:30186396-30186137 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 260-539 |
| Cow position: | chr18:19850223-19849956 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 128, 53 |
| Conread position: | 260-547 |
| Cow position: | chr18:33793220-33793511 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 260-547 |
| Cow position: | chr18:51406369-51406101 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-552 |
| Cow position: | chr18:3179942-3180228 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 51 |
| Conread position: | 260-552 |
| Cow position: | chr18:4540350-4540068 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 260-552 |
| Cow position: | chr18:24021913-24022188 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-555 |
| Cow position: | chr18:39709412-39709701 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 260-558 |
| Cow position: | chr18:7964753-7965045 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-574 |
| Cow position: | chr18:11183461-11183771 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 261-552 |
| Cow position: | chr18:52635558-52635277 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 261-574 |
| Cow position: | chr18:35636824-35636520 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 264-547 |
| Cow position: | chr18:7351544-7351262 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 264-552 |
| Cow position: | chr18:19193819-19193544 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 269-520 |
| Cow position: | chr18:13877204-13876953 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 269-574 |
| Cow position: | chr18:49161925-49161626 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.