Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-438 |
| Cow position: | chr19:48697877-48698326 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 1-484 |
| Cow position: | chr19:35081822-35082322 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-513 |
| Cow position: | chr19:12787637-12788169 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 40 |
| Conread position: | 1-541 |
| Cow position: | chr19:29071445-29070888 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 44 |
| Conread position: | 1-552 |
| Cow position: | chr19:12614256-12613694 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 320 |
| Conread position: | 1-552 |
| Cow position: | chr19:33932878-33932313 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 175 |
| Conread position: | 1-574 |
| Cow position: | chr19:730437-729888 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 2-305 |
| Cow position: | chr19:14580875-14581193 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 2-550 |
| Cow position: | chr19:38397023-38396445 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 2-551 |
| Cow position: | chr19:4379546-4380106 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 2-565 |
| Cow position: | chr19:39923930-39924509 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 3-444 |
| Cow position: | chr19:39987296-39986835 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 3-463 |
| Cow position: | chr19:15766374-15766844 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 3-547 |
| Cow position: | chr19:25085785-25086361 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 3-547 |
| Cow position: | chr19:48408784-48409339 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 387 |
| Conread position: | 8-444 |
| Cow position: | chr19:7491684-7492132 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 156 |
| Conread position: | 8-555 |
| Cow position: | chr19:24358970-24358392 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 339 |
| Conread position: | 29-500 |
| Cow position: | chr19:52137537-52137037 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 305 |
| Conread position: | 43-574 |
| Cow position: | chr19:42664508-42663967 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 57-555 |
| Cow position: | chr19:43440487-43440995 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 65-569 |
| Cow position: | chr19:9293580-9294114 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 131-315 |
| Cow position: | chr19:32952939-32953122 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 154-451 |
| Cow position: | chr19:5434627-5434326 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 154-451 |
| Cow position: | chr19:47187745-47187434 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 161-564 |
| Cow position: | chr19:46821875-46822281 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 183-552 |
| Cow position: | chr19:4446166-4445791 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 185-529 |
| Cow position: | chr19:7542877-7543228 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 185-558 |
| Cow position: | chr19:10786897-10786524 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 186-574 |
| Cow position: | chr19:43431864-43431470 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 192-552 |
| Cow position: | chr19:39577110-39576741 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 133 |
| Conread position: | 203-468 |
| Cow position: | chr19:10212855-10213127 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 203-503 |
| Cow position: | chr19:39649809-39649500 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 203-550 |
| Cow position: | chr19:34287285-34287640 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 214-574 |
| Cow position: | chr19:34956213-34955846 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 219-520 |
| Cow position: | chr19:49358894-49358588 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 259-555 |
| Cow position: | chr19:53657442-53657731 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 260-442 |
| Cow position: | chr19:38638485-38638306 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 51 |
| Conread position: | 260-455 |
| Cow position: | chr19:11376891-11376703 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 260-548 |
| Cow position: | chr19:39056788-39057067 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-552 |
| Cow position: | chr19:9582849-9583144 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 183, 53 |
| Conread position: | 260-554 |
| Cow position: | chr19:20093660-20093372 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 188, 49 |
| Conread position: | 260-555 |
| Cow position: | chr19:21380383-21380097 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 260-558 |
| Cow position: | chr19:31825488-31825178 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 260-561 |
| Cow position: | chr19:25168748-25168457 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 260-562 |
| Cow position: | chr19:30232288-30232568 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 260-562 |
| Cow position: | chr19:42417410-42417702 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-569 |
| Cow position: | chr19:55968144-55967846 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 261-552 |
| Cow position: | chr19:7612174-7612454 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 264-443 |
| Cow position: | chr19:36844772-36844946 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 265-511 |
| Cow position: | chr19:33286801-33287038 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.