Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-442
Cow position: chr2:12237986-12237531 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 25

Conread position: 1-451
Cow position: chr2:1202444-1202885 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 206

Conread position: 1-480
Cow position: chr2:30657319-30656823 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-539
Cow position: chr2:31783222-31783772 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 58

Conread position: 1-550
Cow position: chr2:23271658-23271091 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 170

Conread position: 1-552
Cow position: chr2:1186819-1186250 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 251

Conread position: 1-555
Cow position: chr2:11152944-11152383 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 94

Conread position: 1-558
Cow position: chr2:8121735-8122293 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 74

Conread position: 1-565
Cow position: chr2:12442996-12443576 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 64

Conread position: 1-565
Cow position: chr2:23994988-23994412 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 330

Conread position: 1-572
Cow position: chr2:43978634-43978039 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 112

Conread position: 1-574
Cow position: chr2:279212-278628 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 67

Conread position: 1-574
Cow position: chr2:4017581-4017000 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 91

Conread position: 1-574
Cow position: chr2:12736797-12736219 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 43

Conread position: 1-574
Cow position: chr2:36983689-36984278 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 332

Conread position: 1-574
Cow position: chr2:57557657-57557064 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 2-543
Cow position: chr2:14853596-14854147 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 341

Conread position: 2-544
Cow position: chr2:11696419-11696963 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 2-550
Cow position: chr2:85739404-85739964 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 334

Conread position: 2-565
Cow position: chr2:3623560-3624139 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 332

Conread position: 2-570
Cow position: chr2:71164441-71163855 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 42

Conread position: 2-574
Cow position: chr2:30751446-30752028 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 332

Conread position: 3-434
Cow position: chr2:19288288-19287839 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 332

Conread position: 3-513
Cow position: chr2:31451099-31451633 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 346
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 127, 39

Conread position: 3-550
Cow position: chr2:9688266-9687737 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 134

Conread position: 3-552
Cow position: chr2:35949376-35948825 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 176

Conread position: 3-562
Cow position: chr2:59397778-59397207 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 206

Conread position: 3-574
Cow position: chr2:41451499-41452091 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 332

Conread position: 5-550
Cow position: chr2:16514065-16514629 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 335

Conread position: 8-574
Cow position: chr2:43596886-43596308 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 324

Conread position: 15-455
Cow position: chr2:28632832-28632375 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 317

Conread position: 24-550
Cow position: chr2:40727663-40728201 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 186

Conread position: 32-574
Cow position: chr2:6539936-6539376 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 307

Conread position: 48-437
Cow position: chr2:82268003-82267603 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 153

Conread position: 56-544
Cow position: chr2:9173938-9173427 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 137

Conread position: 71-490
Cow position: chr2:6063804-6063370 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 285
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 164

Conread position: 73-574
Cow position: chr2:14825631-14826148 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 114

Conread position: 74-574
Cow position: chr2:47783731-47784234 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 52

Conread position: 84-563
Cow position: chr2:68488649-68488157 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 258

Conread position: 87-462
Cow position: chr2:1657651-1658031 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 94-572
Cow position: chr2:2672895-2673383 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 238

Conread position: 130-555
Cow position: chr2:13579652-13580087 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 204

Conread position: 131-510
Cow position: chr2:45562864-45563252 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 131-552
Cow position: chr2:7629513-7629082 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 131-552
Cow position: chr2:50061077-50061508 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 133-552
Cow position: chr2:36056385-36055956 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 123

Conread position: 135-555
Cow position: chr2:76314438-76314015 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 88

Conread position: 136-455
Cow position: chr2:29802720-29802390 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 196

Conread position: 138-552
Cow position: chr2:26483429-26483005 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 187

Conread position: 141-554
Cow position: chr2:73467082-73466671 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 178

Conread position: 151-444
Cow position: chr2:9370367-9370063 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 173

Conread position: 154-554
Cow position: chr2:72527395-72527795 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 168

Conread position: 154-560
Cow position: chr2:49608028-49608436 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 168

Conread position: 156-552
Cow position: chr2:18997178-18997566 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 167-574
Cow position: chr2:31119463-31119878 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 169-565
Cow position: chr2:47454184-47453784 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 156

Conread position: 177-561
Cow position: chr2:86004986-86004603 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 39, 25

Conread position: 179-574
Cow position: chr2:71624929-71624516 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 318

Conread position: 181-565
Cow position: chr2:12371028-12371422 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 144

Conread position: 185-453
Cow position: chr2:26102210-26102493 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 31, 49

Conread position: 197-574
Cow position: chr2:1365416-1365027 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 130

Conread position: 203-547
Cow position: chr2:13467191-13467534 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 203-552
Cow position: chr2:82581445-82581090 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 210-493
Cow position: chr2:47467101-47467392 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 52, 115

Conread position: 214-523
Cow position: chr2:39051487-39051801 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 27

Conread position: 214-555
Cow position: chr2:27358540-27358884 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 111

Conread position: 214-558
Cow position: chr2:64197500-64197136 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 249
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 113

Conread position: 214-574
Cow position: chr2:64532841-64533204 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 111

Conread position: 216-463
Cow position: chr2:46058835-46058578 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 109

Conread position: 217-544
Cow position: chr2:36423530-36423848 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 110

Conread position: 218-574
Cow position: chr2:44170059-44170419 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 103

Conread position: 220-438
Cow position: chr2:39500480-39500705 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 42, 103

Conread position: 221-507
Cow position: chr2:52409771-52409474 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 106

Conread position: 223-574
Cow position: chr2:45463056-45462713 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 89

Conread position: 227-528
Cow position: chr2:30352773-30352474 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 236-574
Cow position: chr2:10124935-10124594 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 82

Conread position: 242-455
Cow position: chr2:50561803-50562019 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 77

Conread position: 260-451
Cow position: chr2:32490146-32489955 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 260-455
Cow position: chr2:65036859-65036664 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 260-480
Cow position: chr2:19872015-19872237 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 183, 53

Conread position: 260-547
Cow position: chr2:45710596-45710872 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-549
Cow position: chr2:56737802-56737506 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 184, 51

Conread position: 260-552
Cow position: chr2:70674292-70674573 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 260-558
Cow position: chr2:71800535-71800243 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 53

Conread position: 260-558
Cow position: chr2:81927402-81927702 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 58

Conread position: 260-562
Cow position: chr2:14883838-14884133 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 260-563
Cow position: chr2:57775904-57776200 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-563
Cow position: chr2:63865772-63865480 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 260-563
Cow position: chr2:70580162-70579861 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 0

Conread position: 260-572
Cow position: chr2:55387105-55387405 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 260-574
Cow position: chr2:36146528-36146232 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 260-574
Cow position: chr2:42383959-42384265 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 261-463
Cow position: chr2:62744738-62744543 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 264-525
Cow position: chr2:55302225-55302485 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 52

Conread position: 264-542
Cow position: chr2:27338228-27337944 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 189, 75

Conread position: 264-558
Cow position: chr2:82270029-82270316 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 51

Conread position: 264-572
Cow position: chr2:86100440-86100737 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 264-574
Cow position: chr2:988250-988553 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 264-574
Cow position: chr2:26439166-26438866 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 59

Conread position: 265-574
Cow position: chr2:74106456-74106147 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 101, 48

Conread position: 269-560
Cow position: chr2:38628480-38628756 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 272-574
Cow position: chr2:31355274-31355566 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 276-574
Cow position: chr2:85249922-85250216 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 12, 124

Show alignments to all cow chromosomes.