Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-543 |
| Cow position: | chr20:10099679-10100238 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-565 |
| Cow position: | chr20:34458714-34458137 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 2-550 |
| Cow position: | chr20:21018878-21019449 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 341 |
| Conread position: | 2-574 |
| Cow position: | chr20:31076857-31077453 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 183 |
| Conread position: | 2-574 |
| Cow position: | chr20:40781296-40781872 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 329 |
| Conread position: | 3-419 |
| Cow position: | chr20:22006775-22007206 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 3-558 |
| Cow position: | chr20:6258736-6258175 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 3-558 |
| Cow position: | chr20:15117365-15117939 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 3-574 |
| Cow position: | chr20:8429053-8429646 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 348 |
| Conread position: | 4-559 |
| Cow position: | chr20:20353586-20353026 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 6-574 |
| Cow position: | chr20:23791933-23792512 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 35 |
| Conread position: | 11-562 |
| Cow position: | chr20:4945919-4945353 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 11-574 |
| Cow position: | chr20:6239316-6238742 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 12-550 |
| Cow position: | chr20:21324437-21325008 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 43-554 |
| Cow position: | chr20:9474251-9473729 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 49-404 |
| Cow position: | chr20:4205250-4205611 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 273 |
| Conread position: | 50-554 |
| Cow position: | chr20:41976801-41977306 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 69 |
| Conread position: | 62-558 |
| Cow position: | chr20:35970321-35970831 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 274 |
| Conread position: | 65-563 |
| Cow position: | chr20:34900200-34900713 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 117 |
| Conread position: | 80-555 |
| Cow position: | chr20:17831237-17831731 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 86-484 |
| Cow position: | chr20:18162427-18162842 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 246 |
| Conread position: | 93-420 |
| Cow position: | chr20:4911506-4911840 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 123, 41 |
| Conread position: | 126-515 |
| Cow position: | chr20:7527915-7527515 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 131-574 |
| Cow position: | chr20:12839510-12839958 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 138-484 |
| Cow position: | chr20:14926106-14926461 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 188 |
| Conread position: | 138-552 |
| Cow position: | chr20:7710746-7710327 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 138-558 |
| Cow position: | chr20:3599939-3599501 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 138-574 |
| Cow position: | chr20:8482743-8482305 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 139-572 |
| Cow position: | chr20:34202109-34202550 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 145-574 |
| Cow position: | chr20:39742787-39743220 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 150-552 |
| Cow position: | chr20:15821786-15822199 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 262 |
| Conread position: | 154-572 |
| Cow position: | chr20:21371785-21372219 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 169-552 |
| Cow position: | chr20:5104944-5104552 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 160 |
| Conread position: | 184-552 |
| Cow position: | chr20:3781927-3781543 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 186-548 |
| Cow position: | chr20:5939469-5939090 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 141 |
| Conread position: | 188-574 |
| Cow position: | chr20:22313647-22313257 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 189-574 |
| Cow position: | chr20:6096972-6096587 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 192-574 |
| Cow position: | chr20:34836351-34835966 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 195-574 |
| Cow position: | chr20:14735170-14735577 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 7, 138 |
| Conread position: | 203-546 |
| Cow position: | chr20:38935681-38935336 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 214-558 |
| Cow position: | chr20:11614506-11614154 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 215-465 |
| Cow position: | chr20:1191430-1191688 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 241-558 |
| Cow position: | chr20:11176669-11176358 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 260-554 |
| Cow position: | chr20:23065246-23064944 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 260-554 |
| Cow position: | chr20:33363112-33363403 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 260-563 |
| Cow position: | chr20:14832028-14831718 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 260-573 |
| Cow position: | chr20:36780138-36779827 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 260-574 |
| Cow position: | chr20:21959458-21959150 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 264-574 |
| Cow position: | chr20:26076683-26076985 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 277-558 |
| Cow position: | chr20:31747009-31746737 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.