Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-558 |
| Cow position: | chr21:5595002-5595569 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 175 |
| Conread position: | 1-558 |
| Cow position: | chr21:13111458-13110887 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 1-558 |
| Cow position: | chr21:28616944-28617497 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 119 |
| Conread position: | 1-563 |
| Cow position: | chr21:15546025-15545455 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 242 |
| Conread position: | 2-474 |
| Cow position: | chr21:16278069-16278537 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 2-485 |
| Cow position: | chr21:31252665-31253165 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 331 |
| Conread position: | 2-540 |
| Cow position: | chr21:6623488-6624034 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 63 |
| Conread position: | 2-544 |
| Cow position: | chr21:2419864-2420400 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 2-550 |
| Cow position: | chr21:26829889-26829342 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 88 |
| Conread position: | 2-562 |
| Cow position: | chr21:18289001-18289576 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 332 |
| Conread position: | 2-563 |
| Cow position: | chr21:37298808-37299384 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 173 |
| Conread position: | 3-492 |
| Cow position: | chr21:28908473-28907994 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 203 |
| Conread position: | 3-544 |
| Cow position: | chr21:20262998-20262438 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 338 |
| Conread position: | 3-554 |
| Cow position: | chr21:2366686-2367246 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 114 |
| Conread position: | 3-558 |
| Cow position: | chr21:28810913-28810357 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 3-565 |
| Cow position: | chr21:29214817-29214232 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 186 |
| Conread position: | 31-554 |
| Cow position: | chr21:33420349-33419811 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 40-532 |
| Cow position: | chr21:33579563-33580071 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 300 |
| Conread position: | 44-447 |
| Cow position: | chr21:10000903-10000490 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 160 |
| Conread position: | 44-463 |
| Cow position: | chr21:21076515-21076942 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 284 |
| Conread position: | 59-558 |
| Cow position: | chr21:8126389-8125892 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 119 |
| Conread position: | 61-552 |
| Cow position: | chr21:20926090-20925603 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 76 |
| Conread position: | 69-574 |
| Cow position: | chr21:24130501-24131002 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 82-574 |
| Cow position: | chr21:33209621-33210124 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 85-552 |
| Cow position: | chr21:4999059-4998583 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 89-522 |
| Cow position: | chr21:44657745-44658191 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 89-544 |
| Cow position: | chr21:4282439-4281972 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 246 |
| Conread position: | 98-444 |
| Cow position: | chr21:2261249-2260876 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 234 |
| Conread position: | 151-554 |
| Cow position: | chr21:23683031-23683460 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 153-552 |
| Cow position: | chr21:47823777-47823368 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 176 |
| Conread position: | 154-469 |
| Cow position: | chr21:22464285-22464611 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 159-570 |
| Cow position: | chr21:44671256-44671675 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 169-532 |
| Cow position: | chr21:36756119-36756498 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 46, 260 |
| Conread position: | 174-552 |
| Cow position: | chr21:912445-912063 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 153 |
| Conread position: | 180-552 |
| Cow position: | chr21:20549400-20549007 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 183-501 |
| Cow position: | chr21:13159669-13159998 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 201-555 |
| Cow position: | chr21:38691737-38692096 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 203-451 |
| Cow position: | chr21:8451409-8451647 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 214-453 |
| Cow position: | chr21:6051035-6051289 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 214-552 |
| Cow position: | chr21:46912101-46912445 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 115 |
| Conread position: | 220-574 |
| Cow position: | chr21:42914178-42913822 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 257-555 |
| Cow position: | chr21:4794836-4795132 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 56 |
| Conread position: | 260-460 |
| Cow position: | chr21:297341-297531 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-462 |
| Cow position: | chr21:37719922-37719713 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 260-532 |
| Cow position: | chr21:9981070-9980817 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-547 |
| Cow position: | chr21:28881767-28882041 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-552 |
| Cow position: | chr21:17539352-17539638 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-573 |
| Cow position: | chr21:40244052-40244360 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 51 |
| Conread position: | 260-573 |
| Cow position: | chr21:46462809-46463115 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 53 |
| Conread position: | 260-574 |
| Cow position: | chr21:18494598-18494891 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 264-511 |
| Cow position: | chr21:15976263-15976504 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 191, 45 |
| Conread position: | 264-547 |
| Cow position: | chr21:937674-937937 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 266-574 |
| Cow position: | chr21:34738223-34738526 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 50 |
| Conread position: | 269-547 |
| Cow position: | chr21:16612256-16612528 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 444-574 |
| Cow position: | chr21:41597611-41597741 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.