Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-307 |
| Cow position: | chr22:11922562-11922253 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 132, 110 |
| Conread position: | 1-539 |
| Cow position: | chr22:32650783-32651331 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 219 |
| Conread position: | 1-542 |
| Cow position: | chr22:31870979-31870423 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 210 |
| Conread position: | 1-544 |
| Cow position: | chr22:25659263-25658706 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 165 |
| Conread position: | 1-552 |
| Cow position: | chr22:40373878-40374443 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 91 |
| Conread position: | 1-558 |
| Cow position: | chr22:42499873-42499303 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 332 |
| Conread position: | 1-565 |
| Cow position: | chr22:39902874-39903455 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-574 |
| Cow position: | chr22:10302280-10302869 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 1-574 |
| Cow position: | chr22:31212855-31213432 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 91 |
| Conread position: | 2-460 |
| Cow position: | chr22:47462854-47463316 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 43 |
| Conread position: | 2-574 |
| Cow position: | chr22:46666220-46665643 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 3-563 |
| Cow position: | chr22:13017512-13016945 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 5-558 |
| Cow position: | chr22:21502016-21502582 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 13-574 |
| Cow position: | chr22:32891989-32892554 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 121 |
| Conread position: | 19-543 |
| Cow position: | chr22:22154894-22155428 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 40-565 |
| Cow position: | chr22:42923551-42923009 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 292 |
| Conread position: | 51-574 |
| Cow position: | chr22:43788817-43788268 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 172 |
| Conread position: | 54-558 |
| Cow position: | chr22:25206644-25206127 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 72-555 |
| Cow position: | chr22:10920512-10920024 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 80-574 |
| Cow position: | chr22:17993692-17993172 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 284 |
| Conread position: | 94-452 |
| Cow position: | chr22:35534016-35533640 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 249 |
| Conread position: | 94-570 |
| Cow position: | chr22:30712112-30712606 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 239 |
| Conread position: | 100-565 |
| Cow position: | chr22:22135580-22136062 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 232 |
| Conread position: | 114-563 |
| Cow position: | chr22:27577123-27577581 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 130-560 |
| Cow position: | chr22:30954445-30954884 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 131-438 |
| Cow position: | chr22:36546728-36546413 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 85, 188 |
| Conread position: | 133-572 |
| Cow position: | chr22:40590306-40590746 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 191 |
| Conread position: | 138-574 |
| Cow position: | chr22:11612841-11613279 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 191 |
| Conread position: | 141-568 |
| Cow position: | chr22:42934078-42933635 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 262 |
| Conread position: | 149-563 |
| Cow position: | chr22:13950606-13951021 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 154-564 |
| Cow position: | chr22:10415345-10415764 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 156-547 |
| Cow position: | chr22:15059402-15059797 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 168 |
| Conread position: | 156-554 |
| Cow position: | chr22:8303415-8303012 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 161-555 |
| Cow position: | chr22:779816-780213 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 161-565 |
| Cow position: | chr22:39748178-39747759 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 290 |
| Conread position: | 164-412 |
| Cow position: | chr22:6718818-6719076 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 161 |
| Conread position: | 172-554 |
| Cow position: | chr22:3332311-3332704 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 156 |
| Conread position: | 173-555 |
| Cow position: | chr22:21567450-21567837 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 185-550 |
| Cow position: | chr22:26315939-26316308 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 189-514 |
| Cow position: | chr22:876987-877320 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 189-554 |
| Cow position: | chr22:28314907-28315269 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 192-552 |
| Cow position: | chr22:14882644-14882273 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 194-555 |
| Cow position: | chr22:41045456-41045074 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 203-462 |
| Cow position: | chr22:10323190-10323457 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 210-571 |
| Cow position: | chr22:7912971-7913331 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 120 |
| Conread position: | 214-412 |
| Cow position: | chr22:3540110-3540316 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 214-574 |
| Cow position: | chr22:28370448-28370805 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 215-455 |
| Cow position: | chr22:533925-534173 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 152 |
| Conread position: | 216-552 |
| Cow position: | chr22:5467875-5467533 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 222-552 |
| Cow position: | chr22:13840644-13840974 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 248-544 |
| Cow position: | chr22:6123346-6123067 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 253-517 |
| Cow position: | chr22:32698339-32698582 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 258-563 |
| Cow position: | chr22:16236101-16235803 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 55 |
| Conread position: | 259-554 |
| Cow position: | chr22:13720983-13720685 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 198, 54 |
| Conread position: | 260-463 |
| Cow position: | chr22:3254246-3254050 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-547 |
| Cow position: | chr22:18258778-18259060 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-550 |
| Cow position: | chr22:34476450-34476169 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 260-552 |
| Cow position: | chr22:1710116-1710411 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 178, 51 |
| Conread position: | 260-554 |
| Cow position: | chr22:10532047-10532333 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-555 |
| Cow position: | chr22:26151566-26151280 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 49 |
| Conread position: | 260-558 |
| Cow position: | chr22:19822975-19823263 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-565 |
| Cow position: | chr22:8357165-8357466 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 57 |
| Conread position: | 260-572 |
| Cow position: | chr22:4337660-4337961 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 260-574 |
| Cow position: | chr22:13889475-13889775 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 48 |
| Conread position: | 261-476 |
| Cow position: | chr22:25537539-25537751 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 261-527 |
| Cow position: | chr22:16292132-16292388 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 261-558 |
| Cow position: | chr22:10161518-10161804 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-552 |
| Cow position: | chr22:11489097-11489374 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 264-552 |
| Cow position: | chr22:24527504-24527228 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 264-558 |
| Cow position: | chr22:15859568-15859847 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-562 |
| Cow position: | chr22:16449872-16450166 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 264-571 |
| Cow position: | chr22:30689188-30689487 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 264-572 |
| Cow position: | chr22:18196063-18196366 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 265-492 |
| Cow position: | chr22:40376345-40376583 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 265-558 |
| Cow position: | chr22:40399763-40400045 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 266-552 |
| Cow position: | chr22:21407361-21407640 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 268-543 |
| Cow position: | chr22:17813796-17814056 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.