Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-307
Cow position:
Alignm length: 315
Alignm identity: 222
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 132, 110

Conread position: 1-539
Cow position:
Alignm length: 558
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 219

Conread position: 1-542
Cow position:
Alignm length: 567
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 210

Conread position: 1-544
Cow position:
Alignm length: 566
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 165

Conread position: 1-552
Cow position:
Alignm length: 579
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 91

Conread position: 1-558
Cow position:
Alignm length: 582
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 332

Conread position: 1-565
Cow position:
Alignm length: 588
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-574
Cow position:
Alignm length: 603
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 43

Conread position: 1-574
Cow position:
Alignm length: 597
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 91

Conread position: 2-460
Cow position:
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 43

Conread position: 2-574
Cow position:
Alignm length: 604
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 3-563
Cow position:
Alignm length: 588
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 62

Conread position: 5-558
Cow position:
Alignm length: 583
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 64

Conread position: 13-574
Cow position:
Alignm length: 579
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 121

Conread position: 19-543
Cow position:
Alignm length: 543
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 116

Conread position: 40-565
Cow position:
Alignm length: 549
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 292

Conread position: 51-574
Cow position:
Alignm length: 555
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 172

Conread position: 54-558
Cow position:
Alignm length: 529
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 11

Conread position: 72-555
Cow position:
Alignm length: 500
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 20

Conread position: 80-574
Cow position:
Alignm length: 529
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 284

Conread position: 94-452
Cow position:
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 249

Conread position: 94-570
Cow position:
Alignm length: 500
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 239

Conread position: 100-565
Cow position:
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 232

Conread position: 114-563
Cow position:
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 18

Conread position: 130-560
Cow position:
Alignm length: 448
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 83

Conread position: 131-438
Cow position:
Alignm length: 324
Alignm identity: 235
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 85, 188

Conread position: 133-572
Cow position:
Alignm length: 453
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 191

Conread position: 138-574
Cow position:
Alignm length: 453
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 191

Conread position: 141-568
Cow position:
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 262

Conread position: 149-563
Cow position:
Alignm length: 433
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 20

Conread position: 154-564
Cow position:
Alignm length: 427
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 7

Conread position: 156-547
Cow position:
Alignm length: 409
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 168

Conread position: 156-554
Cow position:
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 60

Conread position: 161-555
Cow position:
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 63

Conread position: 161-565
Cow position:
Alignm length: 424
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 290

Conread position: 164-412
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 161

Conread position: 172-554
Cow position:
Alignm length: 400
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 156

Conread position: 173-555
Cow position:
Alignm length: 404
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 40

Conread position: 185-550
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 147

Conread position: 189-514
Cow position:
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 143

Conread position: 189-554
Cow position:
Alignm length: 368
Alignm identity: 241
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 27, 72

Conread position: 192-552
Cow position:
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 143

Conread position: 194-555
Cow position:
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 203-462
Cow position:
Alignm length: 275
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 7

Conread position: 210-571
Cow position:
Alignm length: 376
Alignm identity: 261
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 120

Conread position: 214-412
Cow position:
Alignm length: 213
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 109

Conread position: 214-574
Cow position:
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 99

Conread position: 215-455
Cow position:
Alignm length: 254
Alignm identity: 178
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 152

Conread position: 216-552
Cow position:
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 109

Conread position: 222-552
Cow position:
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 82

Conread position: 248-544
Cow position:
Alignm length: 297
Alignm identity: 214
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 253-517
Cow position:
Alignm length: 265
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 0

Conread position: 258-563
Cow position:
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 55

Conread position: 259-554
Cow position:
Alignm length: 305
Alignm identity: 214
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 198, 54

Conread position: 260-463
Cow position:
Alignm length: 204
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 260-547
Cow position:
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-550
Cow position:
Alignm length: 292
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 48

Conread position: 260-552
Cow position:
Alignm length: 304
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 178, 51

Conread position: 260-554
Cow position:
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-555
Cow position:
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 49

Conread position: 260-558
Cow position:
Alignm length: 299
Alignm identity: 210
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 51, 0

Conread position: 260-565
Cow position:
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 57

Conread position: 260-572
Cow position:
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 51

Conread position: 260-574
Cow position:
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 48

Conread position: 261-476
Cow position:
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 171, 0

Conread position: 261-527
Cow position:
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 77, 52

Conread position: 261-558
Cow position:
Alignm length: 298
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 264-552
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 45

Conread position: 264-552
Cow position:
Alignm length: 292
Alignm identity: 212
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 218, 47

Conread position: 264-558
Cow position:
Alignm length: 295
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 264-562
Cow position:
Alignm length: 304
Alignm identity: 204
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 71, 52

Conread position: 264-571
Cow position:
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 264-572
Cow position:
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 45

Conread position: 265-492
Cow position:
Alignm length: 245
Alignm identity: 174
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 174, 46

Conread position: 265-558
Cow position:
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 266-552
Cow position:
Alignm length: 291
Alignm identity: 204
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 71, 45

Conread position: 268-543
Cow position:
Alignm length: 276
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.