Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-453 |
| Cow position: | chr24:37387113-37386641 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 196 |
| Conread position: | 1-484 |
| Cow position: | chr24:18740790-18740290 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-484 |
| Cow position: | chr24:26794995-26795495 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-544 |
| Cow position: | chr24:13117219-13117771 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 40 |
| Conread position: | 1-565 |
| Cow position: | chr24:8754094-8754675 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-565 |
| Cow position: | chr24:18113034-18113616 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 332 |
| Conread position: | 1-574 |
| Cow position: | chr24:9549841-9550427 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 63 |
| Conread position: | 2-444 |
| Cow position: | chr24:28601460-28601023 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 10 |
| Conread position: | 2-531 |
| Cow position: | chr24:16646357-16645811 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 2-574 |
| Cow position: | chr24:6067763-6067181 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 3-307 |
| Cow position: | chr24:27127521-27127205 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 3-555 |
| Cow position: | chr24:29064388-29063827 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 147 |
| Conread position: | 3-563 |
| Cow position: | chr24:32608892-32609465 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 3-574 |
| Cow position: | chr24:27905687-27906272 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 4-441 |
| Cow position: | chr24:41063039-41063497 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 335 |
| Conread position: | 4-574 |
| Cow position: | chr24:7030905-7030317 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 389 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 169 |
| Conread position: | 15-552 |
| Cow position: | chr24:38814235-38814787 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 191 |
| Conread position: | 17-558 |
| Cow position: | chr24:39501010-39500461 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 13 |
| Conread position: | 42-435 |
| Cow position: | chr24:31815849-31816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 286 |
| Conread position: | 81-574 |
| Cow position: | chr24:6141622-6141126 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 92-574 |
| Cow position: | chr24:36555489-36554993 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 237 |
| Conread position: | 101-550 |
| Cow position: | chr24:6449893-6450328 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 220 |
| Conread position: | 125-532 |
| Cow position: | chr24:39913791-39914207 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 126 |
| Conread position: | 131-465 |
| Cow position: | chr24:17294998-17294647 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 131-547 |
| Cow position: | chr24:30484547-30484133 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 131-558 |
| Cow position: | chr24:32693091-32693524 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 197 |
| Conread position: | 131-558 |
| Cow position: | chr24:33622098-33621664 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 131-574 |
| Cow position: | chr24:5141339-5141778 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 138-552 |
| Cow position: | chr24:9366078-9365654 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 187 |
| Conread position: | 142-554 |
| Cow position: | chr24:32370522-32370092 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 154-532 |
| Cow position: | chr24:32070070-32070466 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 154-554 |
| Cow position: | chr24:24455133-24455551 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 160-551 |
| Cow position: | chr24:18742143-18741756 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 160-572 |
| Cow position: | chr24:40056306-40055888 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 170 |
| Conread position: | 184-552 |
| Cow position: | chr24:28303911-28303533 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 185-574 |
| Cow position: | chr24:28062387-28062786 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 192-544 |
| Cow position: | chr24:9070986-9070626 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 214-490 |
| Cow position: | chr24:16897375-16897087 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 214-574 |
| Cow position: | chr24:29596336-29595977 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 215-574 |
| Cow position: | chr24:7001597-7001230 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 218-433 |
| Cow position: | chr24:28290090-28289868 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 236-565 |
| Cow position: | chr24:20368389-20368721 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 248-563 |
| Cow position: | chr24:34870347-34870051 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 260-430 |
| Cow position: | chr24:30545355-30545185 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-450 |
| Cow position: | chr24:37984817-37984634 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 260-451 |
| Cow position: | chr24:18331215-18331405 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 260-452 |
| Cow position: | chr24:27889377-27889191 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-455 |
| Cow position: | chr24:23695394-23695206 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-551 |
| Cow position: | chr24:43506982-43506700 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-552 |
| Cow position: | chr24:36326218-36326504 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-558 |
| Cow position: | chr24:24002508-24002797 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 260-558 |
| Cow position: | chr24:38655566-38655270 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 56 |
| Conread position: | 260-560 |
| Cow position: | chr24:39441027-39440733 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 260-573 |
| Cow position: | chr24:27809709-27810019 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 53 |
| Conread position: | 260-574 |
| Cow position: | chr24:28336011-28335703 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 228, 53 |
| Conread position: | 264-455 |
| Cow position: | chr24:40184107-40184298 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-558 |
| Cow position: | chr24:33379591-33379877 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 275-574 |
| Cow position: | chr24:32405508-32405214 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 281-558 |
| Cow position: | chr24:38643181-38643457 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 58, 44 |
Show alignments to all cow chromosomes.