Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-408 |
| Cow position: | chr25:18237090-18237494 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 64 |
| Conread position: | 1-455 |
| Cow position: | chr25:35613061-35612592 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 80 |
| Conread position: | 1-552 |
| Cow position: | chr25:2135635-2136189 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 331 |
| Conread position: | 1-554 |
| Cow position: | chr25:15005476-15006043 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 211 |
| Conread position: | 1-555 |
| Cow position: | chr25:35446220-35446780 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 1-574 |
| Cow position: | chr25:17658850-17659422 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 1-574 |
| Cow position: | chr25:24654898-24654310 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 2-552 |
| Cow position: | chr25:17657889-17658451 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 222 |
| Conread position: | 2-554 |
| Cow position: | chr25:13332691-13333264 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 3-465 |
| Cow position: | chr25:18190101-18189622 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 329 |
| Conread position: | 9-552 |
| Cow position: | chr25:22197865-22198425 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 323 |
| Conread position: | 35-574 |
| Cow position: | chr25:36747133-36746586 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 290 |
| Conread position: | 42-554 |
| Cow position: | chr25:11437467-11436962 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 53-303 |
| Cow position: | chr25:18721746-18721489 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 67-552 |
| Cow position: | chr25:35649174-35649676 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 265 |
| Conread position: | 86-465 |
| Cow position: | chr25:2595354-2595740 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 42 |
| Conread position: | 118-451 |
| Cow position: | chr25:27510864-27510522 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 98, 7 |
| Conread position: | 131-463 |
| Cow position: | chr25:15453112-15452770 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 131-552 |
| Cow position: | chr25:20394604-20395039 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 131-565 |
| Cow position: | chr25:10896320-10895876 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 150-552 |
| Cow position: | chr25:33255814-33256206 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 54 |
| Conread position: | 154-574 |
| Cow position: | chr25:23829682-23829258 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 157-552 |
| Cow position: | chr25:14834228-14833818 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 166 |
| Conread position: | 160-574 |
| Cow position: | chr25:35347343-35347764 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 182-526 |
| Cow position: | chr25:21041279-21041633 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 187-562 |
| Cow position: | chr25:14648074-14647690 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 151 |
| Conread position: | 192-547 |
| Cow position: | chr25:24572539-24572907 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 192-552 |
| Cow position: | chr25:22730132-22730476 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 194-528 |
| Cow position: | chr25:598803-599149 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 194-550 |
| Cow position: | chr25:26111754-26112110 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 203-468 |
| Cow position: | chr25:40906794-40906522 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 214-554 |
| Cow position: | chr25:6892034-6891679 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 218-573 |
| Cow position: | chr25:3992286-3992649 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 260-403 |
| Cow position: | chr25:27521585-27521449 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-550 |
| Cow position: | chr25:14225250-14224960 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 217 |
| Conread position: | 260-552 |
| Cow position: | chr25:35339887-35340170 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-558 |
| Cow position: | chr25:16738389-16738099 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 264, 51 |
| Conread position: | 260-558 |
| Cow position: | chr25:33838940-33839231 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-558 |
| Cow position: | chr25:36779048-36779336 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-565 |
| Cow position: | chr25:18294763-18294464 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 51 |
| Conread position: | 260-574 |
| Cow position: | chr25:10011167-10010862 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-574 |
| Cow position: | chr25:21191041-21191347 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 261-555 |
| Cow position: | chr25:20060475-20060190 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 52 |
| Conread position: | 261-558 |
| Cow position: | chr25:13569620-13569323 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-542 |
| Cow position: | chr25:30817128-30817401 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 271-574 |
| Cow position: | chr25:1735753-1735456 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 275-433 |
| Cow position: | chr25:7328920-7329072 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 275-541 |
| Cow position: | chr25:787840-788094 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 275-542 |
| Cow position: | chr25:12171032-12171289 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.