Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-317 |
| Cow position: | chr27:25112653-25112986 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 187 |
| Conread position: | 1-435 |
| Cow position: | chr27:11470020-11470468 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 1-484 |
| Cow position: | chr27:8201422-8201919 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 334 |
| Conread position: | 1-531 |
| Cow position: | chr27:26856527-26857072 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 335 |
| Conread position: | 1-549 |
| Cow position: | chr27:21283759-21283197 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 1-552 |
| Cow position: | chr27:16823477-16822930 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 1-552 |
| Cow position: | chr27:23893821-23894389 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-555 |
| Cow position: | chr27:19388703-19388131 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 175 |
| Conread position: | 1-558 |
| Cow position: | chr27:2331990-2332557 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 62 |
| Conread position: | 1-563 |
| Cow position: | chr27:16045216-16045796 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 332 |
| Conread position: | 2-555 |
| Cow position: | chr27:9254654-9254086 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 371 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 128, 51 |
| Conread position: | 2-574 |
| Cow position: | chr27:13409483-13410075 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 162 |
| Conread position: | 2-574 |
| Cow position: | chr27:22329979-22330570 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 180 |
| Conread position: | 3-528 |
| Cow position: | chr27:1636270-1636801 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 343 |
| Conread position: | 3-574 |
| Cow position: | chr27:16787511-16786921 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 52 |
| Conread position: | 29-574 |
| Cow position: | chr27:27063801-27064345 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 33-451 |
| Cow position: | chr27:22559727-22559295 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 297 |
| Conread position: | 40-552 |
| Cow position: | chr27:15868021-15867508 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 41-574 |
| Cow position: | chr27:19423863-19423298 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 308 |
| Conread position: | 74-573 |
| Cow position: | chr27:24999126-24999639 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 146 |
| Conread position: | 85-484 |
| Cow position: | chr27:20798984-20799398 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 92-573 |
| Cow position: | chr27:13317372-13317859 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 242 |
| Conread position: | 131-488 |
| Cow position: | chr27:26436156-26436517 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 197 |
| Conread position: | 131-563 |
| Cow position: | chr27:27930886-27931317 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 199 |
| Conread position: | 131-574 |
| Cow position: | chr27:15643910-15644363 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 196 |
| Conread position: | 138-539 |
| Cow position: | chr27:26998875-26999295 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 258 |
| Conread position: | 138-542 |
| Cow position: | chr27:26142334-26141917 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 184 |
| Conread position: | 138-574 |
| Cow position: | chr27:13876263-13875829 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 143-574 |
| Cow position: | chr27:2900707-2901143 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 183 |
| Conread position: | 146-574 |
| Cow position: | chr27:23128984-23128553 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 181 |
| Conread position: | 148-552 |
| Cow position: | chr27:23595788-23595389 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 162 |
| Conread position: | 154-565 |
| Cow position: | chr27:6074438-6074022 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 165-538 |
| Cow position: | chr27:17469370-17469753 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 43 |
| Conread position: | 166-555 |
| Cow position: | chr27:26223752-26224155 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 172-444 |
| Cow position: | chr27:24224086-24224361 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 114 |
| Conread position: | 188-552 |
| Cow position: | chr27:22107766-22108145 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 189-574 |
| Cow position: | chr27:23511608-23511216 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 215-574 |
| Cow position: | chr27:1173083-1173450 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 248-465 |
| Cow position: | chr27:21452208-21452422 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 260-440 |
| Cow position: | chr27:25277574-25277394 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 260-453 |
| Cow position: | chr27:26219337-26219148 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 185, 51 |
| Conread position: | 260-550 |
| Cow position: | chr27:26313799-26314079 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-555 |
| Cow position: | chr27:22440544-22440253 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 48 |
| Conread position: | 260-560 |
| Cow position: | chr27:15927174-15926880 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 260-574 |
| Cow position: | chr27:23454748-23455052 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 283, 56 |
| Conread position: | 261-552 |
| Cow position: | chr27:10992768-10992470 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 203, 47 |
| Conread position: | 261-563 |
| Cow position: | chr27:732964-732677 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 263-465 |
| Cow position: | chr27:26239642-26239448 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 275-455 |
| Cow position: | chr27:7648145-7648321 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 275-568 |
| Cow position: | chr27:26300228-26299943 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 416-574 |
| Cow position: | chr27:31147421-31147576 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.