Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-445 |
| Cow position: | chr28:16371502-16371054 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 1-465 |
| Cow position: | chr28:7807459-7807939 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 322 |
| Conread position: | 1-552 |
| Cow position: | chr28:24603459-24604025 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 156 |
| Conread position: | 1-574 |
| Cow position: | chr28:34082737-34082154 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 333 |
| Conread position: | 2-455 |
| Cow position: | chr28:13865085-13865554 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 2-552 |
| Cow position: | chr28:25248653-25249200 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 305 |
| Conread position: | 2-562 |
| Cow position: | chr28:10530190-10529627 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 42 |
| Conread position: | 3-466 |
| Cow position: | chr28:31842403-31841922 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 331 |
| Conread position: | 3-474 |
| Cow position: | chr28:7981428-7980935 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 336 |
| Conread position: | 3-574 |
| Cow position: | chr28:22501197-22500616 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 337 |
| Conread position: | 5-511 |
| Cow position: | chr28:10589718-10589224 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 14-563 |
| Cow position: | chr28:3914008-3914566 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 163 |
| Conread position: | 15-552 |
| Cow position: | chr28:26923084-26922519 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 414 |
| Conread position: | 20-574 |
| Cow position: | chr28:11752857-11752277 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 213 |
| Conread position: | 31-565 |
| Cow position: | chr28:3627637-3628189 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 302 |
| Conread position: | 48-490 |
| Cow position: | chr28:6090488-6090944 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 169 |
| Conread position: | 58-552 |
| Cow position: | chr28:12998215-12998722 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 61, 147 |
| Conread position: | 65-558 |
| Cow position: | chr28:11452134-11451616 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 268 |
| Conread position: | 80-550 |
| Cow position: | chr28:4535839-4536314 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 95-574 |
| Cow position: | chr28:16246879-16246402 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 148 |
| Conread position: | 131-535 |
| Cow position: | chr28:10900237-10900649 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 131-574 |
| Cow position: | chr28:9285949-9285510 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 198 |
| Conread position: | 138-555 |
| Cow position: | chr28:20124209-20124634 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 193 |
| Conread position: | 154-455 |
| Cow position: | chr28:1537123-1537430 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 155-562 |
| Cow position: | chr28:22308114-22308504 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 123 |
| Conread position: | 168-565 |
| Cow position: | chr28:23114831-23114424 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 194-558 |
| Cow position: | chr28:24686099-24686473 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 203-554 |
| Cow position: | chr28:21598761-21598406 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 214-554 |
| Cow position: | chr28:18717610-18717274 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 34 |
| Conread position: | 218-574 |
| Cow position: | chr28:11427031-11426678 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 248-560 |
| Cow position: | chr28:32729691-32729379 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 16 |
| Conread position: | 260-455 |
| Cow position: | chr28:32747475-32747666 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 260-478 |
| Cow position: | chr28:13290618-13290401 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 181, 51 |
| Conread position: | 260-521 |
| Cow position: | chr28:32174209-32174468 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 260-526 |
| Cow position: | chr28:16388211-16388462 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-552 |
| Cow position: | chr28:10977424-10977712 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 49 |
| Conread position: | 260-552 |
| Cow position: | chr28:11585647-11585362 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-554 |
| Cow position: | chr28:21129563-21129278 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 217, 48 |
| Conread position: | 260-562 |
| Cow position: | chr28:22322824-22323121 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 260-574 |
| Cow position: | chr28:4058288-4058592 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 261-463 |
| Cow position: | chr28:3494063-3493869 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 264-506 |
| Cow position: | chr28:4139114-4138887 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 264-574 |
| Cow position: | chr28:5371344-5371044 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 44 |
| Conread position: | 264-574 |
| Cow position: | chr28:23254223-23253933 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 265-555 |
| Cow position: | chr28:22164533-22164819 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 266-456 |
| Cow position: | chr28:13447301-13447483 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 266-558 |
| Cow position: | chr28:23802223-23802507 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 42 |
| Conread position: | 268-438 |
| Cow position: | chr28:11818346-11818177 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 268-465 |
| Cow position: | chr28:9637332-9637141 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 276-552 |
| Cow position: | chr28:26103303-26103561 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 276-565 |
| Cow position: | chr28:11527685-11527398 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 54 |
Show alignments to all cow chromosomes.