Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-440 |
| Cow position: | chr29:27858082-27858540 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 214 |
| Conread position: | 1-455 |
| Cow position: | chr29:2624243-2623772 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 239 |
| Conread position: | 1-463 |
| Cow position: | chr29:16012471-16011995 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 106 |
| Conread position: | 1-466 |
| Cow position: | chr29:1743003-1743485 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 329 |
| Conread position: | 1-486 |
| Cow position: | chr29:19891069-19891564 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 1-552 |
| Cow position: | chr29:11119208-11118640 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-552 |
| Cow position: | chr29:18011079-18011643 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 91 |
| Conread position: | 1-558 |
| Cow position: | chr29:14116318-14116887 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 43 |
| Conread position: | 1-563 |
| Cow position: | chr29:9332419-9332995 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 1-566 |
| Cow position: | chr29:38409701-38410282 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 1-573 |
| Cow position: | chr29:32962811-32963414 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 159 |
| Conread position: | 2-563 |
| Cow position: | chr29:649542-650124 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 164 |
| Conread position: | 2-574 |
| Cow position: | chr29:19761563-19762133 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 122 |
| Conread position: | 3-552 |
| Cow position: | chr29:32289894-32290441 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 185 |
| Conread position: | 3-563 |
| Cow position: | chr29:11136604-11136042 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 132 |
| Conread position: | 4-508 |
| Cow position: | chr29:32644185-32644708 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 169 |
| Conread position: | 5-554 |
| Cow position: | chr29:29056460-29057022 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 197 |
| Conread position: | 32-435 |
| Cow position: | chr29:984159-984586 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 314 |
| Conread position: | 32-565 |
| Cow position: | chr29:15251384-15251934 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 300 |
| Conread position: | 36-574 |
| Cow position: | chr29:686881-686335 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 44-563 |
| Cow position: | chr29:11695850-11696383 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 49-411 |
| Cow position: | chr29:31594746-31594371 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 56-574 |
| Cow position: | chr29:23988118-23988669 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 351 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 81, 116 |
| Conread position: | 57-465 |
| Cow position: | chr29:35739171-35738752 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 87-558 |
| Cow position: | chr29:18084943-18085436 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 101-441 |
| Cow position: | chr29:3501769-3502122 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 131-486 |
| Cow position: | chr29:8681539-8681179 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 131-552 |
| Cow position: | chr29:21443938-21443505 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 198 |
| Conread position: | 133-552 |
| Cow position: | chr29:12898200-12898630 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 193 |
| Conread position: | 134-563 |
| Cow position: | chr29:24121420-24121009 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 138-532 |
| Cow position: | chr29:45006201-45005800 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 186 |
| Conread position: | 138-555 |
| Cow position: | chr29:1956675-1956247 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 196 |
| Conread position: | 142-539 |
| Cow position: | chr29:19428086-19428489 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 187 |
| Conread position: | 153-509 |
| Cow position: | chr29:18528308-18527937 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 188 |
| Conread position: | 154-437 |
| Cow position: | chr29:18012042-18012323 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 157-548 |
| Cow position: | chr29:457609-457212 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 171-547 |
| Cow position: | chr29:21592162-21592533 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 215-574 |
| Cow position: | chr29:1324933-1325298 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 220-565 |
| Cow position: | chr29:44233439-44233096 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 248-560 |
| Cow position: | chr29:28506631-28506928 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 259-573 |
| Cow position: | chr29:32308773-32308467 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 260-465 |
| Cow position: | chr29:42709222-42709023 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-558 |
| Cow position: | chr29:465846-465556 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 51 |
| Conread position: | 260-564 |
| Cow position: | chr29:43495623-43495910 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-566 |
| Cow position: | chr29:12901546-12901260 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 261-573 |
| Cow position: | chr29:42821340-42821643 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 216, 47 |
| Conread position: | 261-574 |
| Cow position: | chr29:24952235-24952545 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 264-438 |
| Cow position: | chr29:13848378-13848211 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 264-547 |
| Cow position: | chr29:10674572-10674846 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 267-461 |
| Cow position: | chr29:34298188-34298003 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 275-552 |
| Cow position: | chr29:18212425-18212143 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 294-554 |
| Cow position: | chr29:18963324-18963580 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 138, 0 |
Show alignments to all cow chromosomes.