Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-314
Cow position: chr3:37982948-37982617 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 1-398
Cow position: chr3:70893992-70894400 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 329

Conread position: 1-445
Cow position: chr3:74391493-74391030 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 337

Conread position: 1-453
Cow position: chr3:4031165-4031633 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 335

Conread position: 1-464
Cow position: chr3:64024622-64024145 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 164

Conread position: 1-484
Cow position: chr3:12932184-12932684 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position: chr3:2572945-2573513 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position: chr3:26891908-26892476 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 333

Conread position: 1-552
Cow position: chr3:26920136-26920713 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 129

Conread position: 1-552
Cow position: chr3:77187697-77188259 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 335

Conread position: 1-555
Cow position: chr3:2537512-2538071 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 41

Conread position: 1-555
Cow position: chr3:45700083-45700653 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 28

Conread position: 1-558
Cow position: chr3:30567531-30568106 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 335

Conread position: 1-558
Cow position: chr3:38096318-38096892 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 1-563
Cow position: chr3:6689247-6689822 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 124

Conread position: 1-563
Cow position: chr3:23735854-23735275 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 53

Conread position: 1-565
Cow position: chr3:41018893-41018312 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-568
Cow position: chr3:5420623-5420033 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 43

Conread position: 1-574
Cow position: chr3:24638819-24639426 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 512

Conread position: 1-574
Cow position: chr3:34503718-34503131 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 43

Conread position: 1-574
Cow position: chr3:43528984-43528397 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 106

Conread position: 1-574
Cow position: chr3:64654086-64654642 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 40

Conread position: 2-466
Cow position: chr3:30908702-30908215 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 34

Conread position: 2-554
Cow position: chr3:42603075-42603650 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 174

Conread position: 2-555
Cow position: chr3:17864848-17865413 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 331

Conread position: 2-572
Cow position: chr3:72390337-72390917 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 240

Conread position: 2-574
Cow position: chr3:25690990-25691588 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 397
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 127, 26

Conread position: 2-574
Cow position: chr3:51032596-51033181 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 173

Conread position: 3-433
Cow position: chr3:38863115-38863541 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 89

Conread position: 3-460
Cow position: chr3:73936782-73936300 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 3-538
Cow position: chr3:16114825-16115370 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 41

Conread position: 3-552
Cow position: chr3:75479280-75479828 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 25

Conread position: 3-552
Cow position: chr3:79094801-79094253 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 124

Conread position: 3-568
Cow position: chr3:76154987-76155542 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 23

Conread position: 7-463
Cow position: chr3:73459479-73459951 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 325

Conread position: 7-574
Cow position: chr3:23169811-23169231 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 41

Conread position: 30-450
Cow position: chr3:20390132-20389694 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 5

Conread position: 37-552
Cow position: chr3:14145127-14144595 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 295

Conread position: 43-552
Cow position: chr3:55110542-55110027 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 110

Conread position: 56-490
Cow position: chr3:29595673-29596122 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 281

Conread position: 72-552
Cow position: chr3:2674357-2674846 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 257

Conread position: 75-552
Cow position: chr3:28933395-28933889 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 257

Conread position: 79-552
Cow position: chr3:65236343-65236840 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 163

Conread position: 85-522
Cow position: chr3:58971236-58971674 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 311

Conread position: 97-574
Cow position: chr3:55272680-55272205 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 230

Conread position: 98-470
Cow position: chr3:73466939-73467323 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 89

Conread position: 114-562
Cow position: chr3:8900782-8901244 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 18

Conread position: 131-554
Cow position: chr3:37040847-37041246 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 34

Conread position: 131-574
Cow position: chr3:11333924-11333479 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 196

Conread position: 132-563
Cow position: chr3:2334676-2335110 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 22

Conread position: 135-552
Cow position: chr3:54959590-54960007 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 105

Conread position: 138-444
Cow position: chr3:29360771-29360454 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 192

Conread position: 138-554
Cow position: chr3:14626759-14626333 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 138-562
Cow position: chr3:15685507-15685089 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 183

Conread position: 138-574
Cow position: chr3:18886971-18887420 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 192

Conread position: 139-539
Cow position: chr3:50124094-50123707 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 7

Conread position: 141-574
Cow position: chr3:9842971-9843422 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 13

Conread position: 147-438
Cow position: chr3:39172097-39171801 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 115, 31

Conread position: 154-552
Cow position: chr3:11254736-11254333 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 9

Conread position: 154-574
Cow position: chr3:174365-174768 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 102

Conread position: 154-574
Cow position: chr3:19711906-19711477 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 175

Conread position: 155-574
Cow position: chr3:36570631-36570211 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 169

Conread position: 175-574
Cow position: chr3:53903617-53904021 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 144

Conread position: 178-563
Cow position: chr3:22089847-22089455 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 148

Conread position: 181-510
Cow position: chr3:8591891-8591570 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 7

Conread position: 187-520
Cow position: chr3:17281560-17281220 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 125

Conread position: 192-574
Cow position: chr3:14552327-14552713 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 135

Conread position: 192-574
Cow position: chr3:77271830-77271428 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 135

Conread position: 203-565
Cow position: chr3:57022044-57022404 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 214-465
Cow position: chr3:75106922-75107173 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 46, 104

Conread position: 215-552
Cow position: chr3:1760131-1760476 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 108

Conread position: 217-515
Cow position: chr3:49218834-49218528 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 106

Conread position: 220-574
Cow position: chr3:15058126-15057758 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 97

Conread position: 221-574
Cow position: chr3:82617862-82618226 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 118

Conread position: 227-555
Cow position: chr3:82460666-82461001 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 82, 7

Conread position: 260-449
Cow position: chr3:2680071-2680253 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 260-451
Cow position: chr3:23876177-23876362 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 260-462
Cow position: chr3:8923295-8923490 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 260-464
Cow position: chr3:59208277-59208478 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 193, 53

Conread position: 260-465
Cow position: chr3:62883504-62883709 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 62

Conread position: 260-465
Cow position: chr3:66903847-66903649 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 260-487
Cow position: chr3:38698072-38698293 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 260-538
Cow position: chr3:1831034-1830761 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 193, 53

Conread position: 260-547
Cow position: chr3:35299206-35299486 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-554
Cow position: chr3:36657242-36656951 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 51

Conread position: 260-558
Cow position: chr3:39065864-39066156 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position: chr3:59648795-59649094 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 261-451
Cow position: chr3:64998355-64998539 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 261-558
Cow position: chr3:65968687-65968977 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 125

Conread position: 261-563
Cow position: chr3:17331300-17331596 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 262-552
Cow position: chr3:19109266-19109553 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 174, 121

Conread position: 264-555
Cow position: chr3:8752992-8753285 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 44, 70

Conread position: 264-558
Cow position: chr3:67929736-67929445 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 47

Conread position: 266-574
Cow position: chr3:16656930-16656642 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 268-547
Cow position: chr3:66374868-66375132 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.