Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-455
Cow position: chr4:43840758-43840288 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 257

Conread position: 1-543
Cow position: chr4:1499873-1499323 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 218

Conread position: 1-552
Cow position: chr4:10613984-10613406 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 111

Conread position: 1-552
Cow position: chr4:19026149-19025580 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position: chr4:60579907-60579339 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-558
Cow position: chr4:54758036-54757476 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 320

Conread position: 1-565
Cow position: chr4:5441438-5440857 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 331

Conread position: 1-565
Cow position: chr4:6547466-6546886 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 330

Conread position: 1-565
Cow position: chr4:27337434-27338013 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 165

Conread position: 1-571
Cow position: chr4:34209318-34209877 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 58

Conread position: 1-572
Cow position: chr4:41097190-41097766 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 321

Conread position: 1-574
Cow position: chr4:24002698-24002115 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 213

Conread position: 1-574
Cow position: chr4:27539891-27540477 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 1-574
Cow position: chr4:48030081-48030670 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 120

Conread position: 1-574
Cow position: chr4:54170654-54171218 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 36

Conread position: 2-453
Cow position: chr4:2601429-2601894 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 15

Conread position: 2-453
Cow position: chr4:61625361-61624892 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 2-547
Cow position: chr4:23853465-23854033 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 427

Conread position: 2-547
Cow position: chr4:67600451-67599904 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 27

Conread position: 2-552
Cow position: chr4:50760855-50760287 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 66

Conread position: 2-558
Cow position: chr4:1436451-1435876 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 194

Conread position: 2-558
Cow position: chr4:11201092-11201656 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 3-307
Cow position: chr4:20091338-20091653 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 3-463
Cow position: chr4:3269035-3268563 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 3-574
Cow position: chr4:28613103-28613676 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 115

Conread position: 3-574
Cow position: chr4:34223158-34223743 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 219

Conread position: 4-412
Cow position: chr4:23847932-23847516 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 115

Conread position: 4-574
Cow position: chr4:11872625-11872057 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 91

Conread position: 5-574
Cow position: chr4:5610784-5610220 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 54

Conread position: 6-555
Cow position: chr4:30690021-30690560 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 158

Conread position: 8-551
Cow position: chr4:19502525-19501968 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 322

Conread position: 13-494
Cow position: chr4:49814719-49814239 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 47

Conread position: 26-555
Cow position: chr4:68362226-68362778 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 421

Conread position: 26-558
Cow position: chr4:18602965-18602420 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 160

Conread position: 32-551
Cow position: chr4:31136053-31136588 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 42

Conread position: 39-573
Cow position: chr4:49408785-49409319 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 23

Conread position: 41-543
Cow position: chr4:14353378-14352857 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 294

Conread position: 42-552
Cow position: chr4:19096625-19097124 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 134

Conread position: 42-565
Cow position: chr4:28456769-28456229 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 290

Conread position: 60-565
Cow position: chr4:13877519-13878037 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 64-307
Cow position: chr4:12914881-12915128 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 207

Conread position: 68-558
Cow position: chr4:37553713-37553205 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 267

Conread position: 95-526
Cow position: chr4:22366491-22366934 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 235

Conread position: 99-574
Cow position: chr4:22052094-22051619 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 45

Conread position: 131-476
Cow position: chr4:13374977-13375332 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 132-463
Cow position: chr4:19492923-19493264 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 40

Conread position: 135-554
Cow position: chr4:40576504-40576082 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 76

Conread position: 138-563
Cow position: chr4:51898410-51898847 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 22

Conread position: 141-455
Cow position: chr4:59106494-59106153 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 141-550
Cow position: chr4:17775175-17774763 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 141-554
Cow position: chr4:62000039-61999619 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 188

Conread position: 141-563
Cow position: chr4:36892760-36893197 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 196

Conread position: 142-552
Cow position: chr4:46709111-46708695 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 17

Conread position: 144-554
Cow position: chr4:19420743-19421166 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 196

Conread position: 147-547
Cow position: chr4:18255282-18255691 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 185

Conread position: 147-552
Cow position: chr4:13589513-13589923 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 182

Conread position: 149-547
Cow position: chr4:59870915-59871320 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 20

Conread position: 149-550
Cow position: chr4:30573877-30574286 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 67

Conread position: 154-530
Cow position: chr4:8413685-8413298 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 176

Conread position: 154-542
Cow position: chr4:54190532-54190917 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 174

Conread position: 154-547
Cow position: chr4:49794109-49794506 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 32

Conread position: 154-549
Cow position: chr4:41186945-41186537 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 178

Conread position: 157-455
Cow position: chr4:12128366-12128074 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 157

Conread position: 157-574
Cow position: chr4:19541551-19541981 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 170

Conread position: 169-465
Cow position: chr4:16092173-16091874 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 155

Conread position: 172-444
Cow position: chr4:66548347-66548059 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 160

Conread position: 173-574
Cow position: chr4:39009410-39009820 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 26

Conread position: 194-572
Cow position: chr4:51850664-51851050 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 57

Conread position: 205-563
Cow position: chr4:61898055-61897696 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 123

Conread position: 209-552
Cow position: chr4:26538104-26538455 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 215-574
Cow position: chr4:12464336-12464701 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 107

Conread position: 215-574
Cow position: chr4:13271650-13272003 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 222-574
Cow position: chr4:7429817-7430174 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 19

Conread position: 257-560
Cow position: chr4:9815806-9815511 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 56

Conread position: 260-480
Cow position: chr4:38934933-38935140 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 207, 41

Conread position: 260-539
Cow position: chr4:67392510-67392789 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 184, 48

Conread position: 260-552
Cow position: chr4:27276996-27276708 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 49

Conread position: 260-552
Cow position: chr4:53999973-53999674 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 51

Conread position: 260-558
Cow position: chr4:351775-352067 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 260-558
Cow position: chr4:20328166-20327877 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 51

Conread position: 260-558
Cow position: chr4:47047288-47047583 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 53

Conread position: 260-563
Cow position: chr4:33090206-33089901 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 260-565
Cow position: chr4:22086433-22086134 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 0

Conread position: 260-569
Cow position: chr4:41301468-41301142 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 58, 320

Conread position: 260-572
Cow position: chr4:41441112-41441418 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position: chr4:1404587-1404896 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 185, 51

Conread position: 264-463
Cow position: chr4:22861372-22861176 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 62

Conread position: 264-492
Cow position: chr4:34383797-34383586 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 264-563
Cow position: chr4:23526242-23526541 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 47

Conread position: 264-574
Cow position: chr4:15623387-15623699 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 149, 214

Conread position: 275-574
Cow position: chr4:22138672-22138381 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 443-574
Cow position: chr4:203424-203291 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.