Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-455
Cow position:
Alignm length: 478
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 257

Conread position: 1-543
Cow position:
Alignm length: 566
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 218

Conread position: 1-552
Cow position:
Alignm length: 582
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 111

Conread position: 1-552
Cow position:
Alignm length: 577
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position:
Alignm length: 575
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-558
Cow position:
Alignm length: 568
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 320

Conread position: 1-565
Cow position:
Alignm length: 588
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 331

Conread position: 1-565
Cow position:
Alignm length: 587
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 330

Conread position: 1-565
Cow position:
Alignm length: 588
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 165

Conread position: 1-571
Cow position:
Alignm length: 581
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 58

Conread position: 1-572
Cow position:
Alignm length: 590
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 321

Conread position: 1-574
Cow position:
Alignm length: 592
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 213

Conread position: 1-574
Cow position:
Alignm length: 598
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 1-574
Cow position:
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 120

Conread position: 1-574
Cow position:
Alignm length: 591
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 36

Conread position: 2-453
Cow position:
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 15

Conread position: 2-453
Cow position:
Alignm length: 472
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 2-547
Cow position:
Alignm length: 571
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 427

Conread position: 2-547
Cow position:
Alignm length: 568
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 27

Conread position: 2-552
Cow position:
Alignm length: 577
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 66

Conread position: 2-558
Cow position:
Alignm length: 584
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 194

Conread position: 2-558
Cow position:
Alignm length: 578
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 3-307
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 3-463
Cow position:
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 3-574
Cow position:
Alignm length: 592
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 115

Conread position: 3-574
Cow position:
Alignm length: 597
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 219

Conread position: 4-412
Cow position:
Alignm length: 424
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 115

Conread position: 4-574
Cow position:
Alignm length: 585
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 91

Conread position: 5-574
Cow position:
Alignm length: 592
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 54

Conread position: 6-555
Cow position:
Alignm length: 561
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 158

Conread position: 8-551
Cow position:
Alignm length: 564
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 322

Conread position: 13-494
Cow position:
Alignm length: 505
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 47

Conread position: 26-555
Cow position:
Alignm length: 554
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 421

Conread position: 26-558
Cow position:
Alignm length: 557
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 160

Conread position: 32-551
Cow position:
Alignm length: 547
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 42

Conread position: 39-573
Cow position:
Alignm length: 549
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 23

Conread position: 41-543
Cow position:
Alignm length: 529
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 294

Conread position: 42-552
Cow position:
Alignm length: 520
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 134

Conread position: 42-565
Cow position:
Alignm length: 547
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 290

Conread position: 60-565
Cow position:
Alignm length: 529
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 64-307
Cow position:
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 207

Conread position: 68-558
Cow position:
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 267

Conread position: 95-526
Cow position:
Alignm length: 453
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 235

Conread position: 99-574
Cow position:
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 45

Conread position: 131-476
Cow position:
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 132-463
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 40

Conread position: 135-554
Cow position:
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 76

Conread position: 138-563
Cow position:
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 22

Conread position: 141-455
Cow position:
Alignm length: 342
Alignm identity: 246
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 141-550
Cow position:
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 141-554
Cow position:
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 188

Conread position: 141-563
Cow position:
Alignm length: 447
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 196

Conread position: 142-552
Cow position:
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 17

Conread position: 144-554
Cow position:
Alignm length: 436
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 196

Conread position: 147-547
Cow position:
Alignm length: 417
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 185

Conread position: 147-552
Cow position:
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 182

Conread position: 149-547
Cow position:
Alignm length: 428
Alignm identity: 302
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 51, 20

Conread position: 149-550
Cow position:
Alignm length: 418
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 67

Conread position: 154-530
Cow position:
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 176

Conread position: 154-542
Cow position:
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 174

Conread position: 154-547
Cow position:
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 32

Conread position: 154-549
Cow position:
Alignm length: 419
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 178

Conread position: 157-455
Cow position:
Alignm length: 301
Alignm identity: 213
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 157

Conread position: 157-574
Cow position:
Alignm length: 441
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 170

Conread position: 169-465
Cow position:
Alignm length: 311
Alignm identity: 216
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 155

Conread position: 172-444
Cow position:
Alignm length: 292
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 160

Conread position: 173-574
Cow position:
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 26

Conread position: 194-572
Cow position:
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 57

Conread position: 205-563
Cow position:
Alignm length: 374
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 123

Conread position: 209-552
Cow position:
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 114

Conread position: 215-574
Cow position:
Alignm length: 374
Alignm identity: 260
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 107

Conread position: 215-574
Cow position:
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 222-574
Cow position:
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 19

Conread position: 257-560
Cow position:
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 56

Conread position: 260-480
Cow position:
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 207, 41

Conread position: 260-539
Cow position:
Alignm length: 292
Alignm identity: 212
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 184, 48

Conread position: 260-552
Cow position:
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 49

Conread position: 260-552
Cow position:
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 51

Conread position: 260-558
Cow position:
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 260-558
Cow position:
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 51

Conread position: 260-558
Cow position:
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 53

Conread position: 260-563
Cow position:
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 260-565
Cow position:
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 0

Conread position: 260-569
Cow position:
Alignm length: 328
Alignm identity: 233
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 58, 320

Conread position: 260-572
Cow position:
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position:
Alignm length: 323
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 185, 51

Conread position: 264-463
Cow position:
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 62

Conread position: 264-492
Cow position:
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 264-563
Cow position:
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 47

Conread position: 264-574
Cow position:
Alignm length: 317
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 149, 214

Conread position: 275-574
Cow position:
Alignm length: 300
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 443-574
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.