Cow genome map
Conread name: | rfcc33b_d9.y1 |
Conread position: | 1-552 |
Cow position: | chr5:5814777-5814209 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-552 |
Cow position: | chr5:29634752-29635320 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-552 |
Cow position: | chr5:44753000-44752445 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 222 |
Conread position: | 1-552 |
Cow position: | chr5:49103147-49103716 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 332 |
Conread position: | 1-552 |
Cow position: | chr5:68273526-68272958 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-555 |
Cow position: | chr5:43984407-43984976 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 263 |
Conread position: | 1-555 |
Cow position: | chr5:54714443-54713868 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 37 |
Conread position: | 1-563 |
Cow position: | chr5:35207559-35208138 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 333 |
Conread position: | 1-565 |
Cow position: | chr5:37626169-37626750 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-574 |
Cow position: | chr5:693876-694470 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 18 |
Conread position: | 1-574 |
Cow position: | chr5:14630613-14630020 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 336 |
Conread position: | 1-574 |
Cow position: | chr5:25231706-25231120 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 26 |
Conread position: | 1-574 |
Cow position: | chr5:26466926-26467507 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 73 |
Conread position: | 1-574 |
Cow position: | chr5:55631387-55631977 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 333 |
Conread position: | 1-574 |
Cow position: | chr5:58004547-58005131 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 97 |
Conread position: | 2-513 |
Cow position: | chr5:39243042-39242513 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 49 |
Conread position: | 2-560 |
Cow position: | chr5:21828155-21828738 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 334 |
Conread position: | 2-562 |
Cow position: | chr5:55943111-55942522 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 347 |
Conread position: | 3-475 |
Cow position: | chr5:15722987-15722506 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 25 |
Conread position: | 3-545 |
Cow position: | chr5:59782441-59781902 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 37 |
Conread position: | 3-552 |
Cow position: | chr5:29827354-29827919 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 89 |
Conread position: | 3-558 |
Cow position: | chr5:59082889-59082324 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 166 |
Conread position: | 3-559 |
Cow position: | chr5:72901853-72902431 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 17 |
Conread position: | 3-573 |
Cow position: | chr5:66256948-66257527 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 329 |
Conread position: | 3-574 |
Cow position: | chr5:63648168-63647589 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 166 |
Conread position: | 22-552 |
Cow position: | chr5:34464264-34463719 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 43 |
Conread position: | 29-552 |
Cow position: | chr5:35543010-35543550 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 303 |
Conread position: | 29-554 |
Cow position: | chr5:55757110-55756571 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 69 |
Conread position: | 32-563 |
Cow position: | chr5:26094828-26094293 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 18 |
Conread position: | 42-562 |
Cow position: | chr5:32393951-32394477 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 289 |
Conread position: | 45-550 |
Cow position: | chr5:44848672-44848155 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 291 |
Conread position: | 47-565 |
Cow position: | chr5:10299716-10300251 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 285 |
Conread position: | 62-451 |
Cow position: | chr5:26156595-26156203 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 40 |
Conread position: | 66-550 |
Cow position: | chr5:24348488-24348975 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 22 |
Conread position: | 75-558 |
Cow position: | chr5:51951726-51952229 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 339 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 60, 25 |
Conread position: | 84-513 |
Cow position: | chr5:7922007-7921552 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 150 |
Conread position: | 131-438 |
Cow position: | chr5:63388183-63388500 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 194 |
Conread position: | 131-545 |
Cow position: | chr5:59779714-59779301 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 27 |
Conread position: | 131-554 |
Cow position: | chr5:62827308-62826886 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 54 |
Conread position: | 131-570 |
Cow position: | chr5:39298962-39299411 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 197 |
Conread position: | 131-574 |
Cow position: | chr5:54126522-54126963 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 29 |
Conread position: | 138-462 |
Cow position: | chr5:41363311-41362979 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 24 |
Conread position: | 138-563 |
Cow position: | chr5:37645508-37645950 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 21 |
Conread position: | 139-487 |
Cow position: | chr5:5193858-5194216 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 247 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 69, 33 |
Conread position: | 141-520 |
Cow position: | chr5:38286540-38286936 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 271 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 75, 70 |
Conread position: | 150-442 |
Cow position: | chr5:68871623-68871915 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 165 |
Conread position: | 155-558 |
Cow position: | chr5:20408202-20407795 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 170 |
Conread position: | 157-552 |
Cow position: | chr5:34638356-34638751 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 8 |
Conread position: | 165-554 |
Cow position: | chr5:58855577-58855971 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 47 |
Conread position: | 166-562 |
Cow position: | chr5:16894299-16893900 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 163 |
Conread position: | 184-552 |
Cow position: | chr5:26378178-26377801 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 31 |
Conread position: | 203-554 |
Cow position: | chr5:16184602-16184955 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 8 |
Conread position: | 213-444 |
Cow position: | chr5:42727272-42727034 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 173 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 49, 112 |
Conread position: | 214-552 |
Cow position: | chr5:44660141-44660497 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 237 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 48, 149 |
Conread position: | 214-555 |
Cow position: | chr5:38831470-38831124 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 252 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 48, 117 |
Conread position: | 214-555 |
Cow position: | chr5:65593393-65593748 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 249 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 49, 115 |
Conread position: | 221-563 |
Cow position: | chr5:67932942-67932588 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 244 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 41, 271 |
Conread position: | 223-463 |
Cow position: | chr5:5337674-5337426 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 176 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 39, 104 |
Conread position: | 240-552 |
Cow position: | chr5:58441099-58441406 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 219 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 13, 70 |
Conread position: | 245-465 |
Cow position: | chr5:62377955-62378167 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 150 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 82, 60 |
Conread position: | 248-451 |
Cow position: | chr5:68846972-68846776 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 149 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 60, 77 |
Conread position: | 255-558 |
Cow position: | chr5:36793605-36793908 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 217 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 182, 56 |
Conread position: | 259-435 |
Cow position: | chr5:45036358-45036533 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 126 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 131, 0 |
Conread position: | 260-489 |
Cow position: | chr5:30977950-30978188 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 173 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 48, 188 |
Conread position: | 260-541 |
Cow position: | chr5:75756198-75756479 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 204 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 195, 48 |
Conread position: | 260-547 |
Cow position: | chr5:33414825-33414548 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-552 |
Cow position: | chr5:6129936-6130218 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 200 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 260-552 |
Cow position: | chr5:10482792-10482506 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 207 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 260-552 |
Cow position: | chr5:54678979-54678693 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 260-554 |
Cow position: | chr5:35144923-35145220 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 53 |
Conread position: | 260-555 |
Cow position: | chr5:26561725-26562022 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 215 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 183, 48 |
Conread position: | 260-558 |
Cow position: | chr5:65776817-65776514 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 218 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 189, 79 |
Conread position: | 260-569 |
Cow position: | chr5:58519820-58519523 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 49 |
Conread position: | 260-574 |
Cow position: | chr5:6528261-6528566 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 51 |
Conread position: | 260-574 |
Cow position: | chr5:14420765-14420457 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 260-574 |
Cow position: | chr5:47756345-47756656 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 261-551 |
Cow position: | chr5:63607986-63607697 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 202 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 72, 52 |
Conread position: | 261-574 |
Cow position: | chr5:55068303-55068594 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 224 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 222, 52 |
Conread position: | 264-436 |
Cow position: | chr5:63456965-63456799 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 131 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 264-523 |
Cow position: | chr5:50821372-50821625 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 186 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 264-552 |
Cow position: | chr5:12672441-12672162 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 203 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 264-552 |
Cow position: | chr5:17027677-17027960 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 207 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 63, 49 |
Conread position: | 264-558 |
Cow position: | chr5:65887430-65887143 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 211 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 43, 54 |
Conread position: | 264-560 |
Cow position: | chr5:26133490-26133200 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 264-563 |
Cow position: | chr5:41604190-41604488 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 208 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 213, 52 |
Conread position: | 409-573 |
Cow position: | chr5:53964088-53963924 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 115 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 447-574 |
Cow position: | chr5:32087960-32087833 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 107 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.