Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-552
Cow position: chr5:5814777-5814209 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position: chr5:29634752-29635320 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-552
Cow position: chr5:44753000-44752445 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 222

Conread position: 1-552
Cow position: chr5:49103147-49103716 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 332

Conread position: 1-552
Cow position: chr5:68273526-68272958 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-555
Cow position: chr5:43984407-43984976 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 263

Conread position: 1-555
Cow position: chr5:54714443-54713868 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 37

Conread position: 1-563
Cow position: chr5:35207559-35208138 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 1-565
Cow position: chr5:37626169-37626750 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-574
Cow position: chr5:693876-694470 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 1-574
Cow position: chr5:14630613-14630020 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 336

Conread position: 1-574
Cow position: chr5:25231706-25231120 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 26

Conread position: 1-574
Cow position: chr5:26466926-26467507 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 73

Conread position: 1-574
Cow position: chr5:55631387-55631977 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 1-574
Cow position: chr5:58004547-58005131 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 97

Conread position: 2-513
Cow position: chr5:39243042-39242513 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 49

Conread position: 2-560
Cow position: chr5:21828155-21828738 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 334

Conread position: 2-562
Cow position: chr5:55943111-55942522 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 347

Conread position: 3-475
Cow position: chr5:15722987-15722506 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 25

Conread position: 3-545
Cow position: chr5:59782441-59781902 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 37

Conread position: 3-552
Cow position: chr5:29827354-29827919 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 89

Conread position: 3-558
Cow position: chr5:59082889-59082324 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 166

Conread position: 3-559
Cow position: chr5:72901853-72902431 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 17

Conread position: 3-573
Cow position: chr5:66256948-66257527 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 329

Conread position: 3-574
Cow position: chr5:63648168-63647589 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 166

Conread position: 22-552
Cow position: chr5:34464264-34463719 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 43

Conread position: 29-552
Cow position: chr5:35543010-35543550 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 303

Conread position: 29-554
Cow position: chr5:55757110-55756571 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 69

Conread position: 32-563
Cow position: chr5:26094828-26094293 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 18

Conread position: 42-562
Cow position: chr5:32393951-32394477 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 289

Conread position: 45-550
Cow position: chr5:44848672-44848155 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 291

Conread position: 47-565
Cow position: chr5:10299716-10300251 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 285

Conread position: 62-451
Cow position: chr5:26156595-26156203 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 40

Conread position: 66-550
Cow position: chr5:24348488-24348975 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 22

Conread position: 75-558
Cow position: chr5:51951726-51952229 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 339
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 60, 25

Conread position: 84-513
Cow position: chr5:7922007-7921552 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 150

Conread position: 131-438
Cow position: chr5:63388183-63388500 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 131-545
Cow position: chr5:59779714-59779301 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 27

Conread position: 131-554
Cow position: chr5:62827308-62826886 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 54

Conread position: 131-570
Cow position: chr5:39298962-39299411 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 197

Conread position: 131-574
Cow position: chr5:54126522-54126963 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 29

Conread position: 138-462
Cow position: chr5:41363311-41362979 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 138-563
Cow position: chr5:37645508-37645950 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 21

Conread position: 139-487
Cow position: chr5:5193858-5194216 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 69, 33

Conread position: 141-520
Cow position: chr5:38286540-38286936 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 271
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 75, 70

Conread position: 150-442
Cow position: chr5:68871623-68871915 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 165

Conread position: 155-558
Cow position: chr5:20408202-20407795 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 170

Conread position: 157-552
Cow position: chr5:34638356-34638751 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 8

Conread position: 165-554
Cow position: chr5:58855577-58855971 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 47

Conread position: 166-562
Cow position: chr5:16894299-16893900 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 163

Conread position: 184-552
Cow position: chr5:26378178-26377801 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 31

Conread position: 203-554
Cow position: chr5:16184602-16184955 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 8

Conread position: 213-444
Cow position: chr5:42727272-42727034 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 112

Conread position: 214-552
Cow position: chr5:44660141-44660497 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 237
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 149

Conread position: 214-555
Cow position: chr5:38831470-38831124 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 117

Conread position: 214-555
Cow position: chr5:65593393-65593748 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 115

Conread position: 221-563
Cow position: chr5:67932942-67932588 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 244
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 41, 271

Conread position: 223-463
Cow position: chr5:5337674-5337426 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 104

Conread position: 240-552
Cow position: chr5:58441099-58441406 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 70

Conread position: 245-465
Cow position: chr5:62377955-62378167 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 82, 60

Conread position: 248-451
Cow position: chr5:68846972-68846776 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 77

Conread position: 255-558
Cow position: chr5:36793605-36793908 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 182, 56

Conread position: 259-435
Cow position: chr5:45036358-45036533 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 260-489
Cow position: chr5:30977950-30978188 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 188

Conread position: 260-541
Cow position: chr5:75756198-75756479 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 195, 48

Conread position: 260-547
Cow position: chr5:33414825-33414548 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-552
Cow position: chr5:6129936-6130218 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 260-552
Cow position: chr5:10482792-10482506 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 0

Conread position: 260-552
Cow position: chr5:54678979-54678693 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 260-554
Cow position: chr5:35144923-35145220 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 53

Conread position: 260-555
Cow position: chr5:26561725-26562022 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 183, 48

Conread position: 260-558
Cow position: chr5:65776817-65776514 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 189, 79

Conread position: 260-569
Cow position: chr5:58519820-58519523 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 49

Conread position: 260-574
Cow position: chr5:6528261-6528566 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 51

Conread position: 260-574
Cow position: chr5:14420765-14420457 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 260-574
Cow position: chr5:47756345-47756656 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 261-551
Cow position: chr5:63607986-63607697 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 72, 52

Conread position: 261-574
Cow position: chr5:55068303-55068594 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 222, 52

Conread position: 264-436
Cow position: chr5:63456965-63456799 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 264-523
Cow position: chr5:50821372-50821625 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 264-552
Cow position: chr5:12672441-12672162 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 0

Conread position: 264-552
Cow position: chr5:17027677-17027960 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 49

Conread position: 264-558
Cow position: chr5:65887430-65887143 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 54

Conread position: 264-560
Cow position: chr5:26133490-26133200 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 264-563
Cow position: chr5:41604190-41604488 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 213, 52

Conread position: 409-573
Cow position: chr5:53964088-53963924 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 447-574
Cow position: chr5:32087960-32087833 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.