Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-455 |
| Cow position: | chr6:45065699-45065249 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 16 |
| Conread position: | 1-460 |
| Cow position: | chr6:6459571-6460047 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 348 |
| Conread position: | 1-468 |
| Cow position: | chr6:50571653-50572114 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 264 |
| Conread position: | 1-552 |
| Cow position: | chr6:41823375-41822807 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-552 |
| Cow position: | chr6:51733543-51734110 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 333 |
| Conread position: | 1-555 |
| Cow position: | chr6:60456140-60456714 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 25 |
| Conread position: | 1-565 |
| Cow position: | chr6:26667563-26666981 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 332 |
| Conread position: | 1-565 |
| Cow position: | chr6:61549265-61548684 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 332 |
| Conread position: | 1-574 |
| Cow position: | chr6:10695183-10695769 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 1-574 |
| Cow position: | chr6:20215934-20215344 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 2-450 |
| Cow position: | chr6:19044651-19045116 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 333 |
| Conread position: | 2-535 |
| Cow position: | chr6:59507669-59508214 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 108 |
| Conread position: | 2-550 |
| Cow position: | chr6:65862001-65862564 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 2-552 |
| Cow position: | chr6:28147589-28148131 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 86 |
| Conread position: | 2-574 |
| Cow position: | chr6:34075332-34075916 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 226 |
| Conread position: | 3-463 |
| Cow position: | chr6:47574252-47574727 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 81 |
| Conread position: | 3-552 |
| Cow position: | chr6:49411360-49410810 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 3-574 |
| Cow position: | chr6:13741013-13741593 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 4-554 |
| Cow position: | chr6:9733514-9732952 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 183 |
| Conread position: | 5-552 |
| Cow position: | chr6:27541027-27541591 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 327 |
| Conread position: | 10-573 |
| Cow position: | chr6:36918837-36918278 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 88 |
| Conread position: | 20-539 |
| Cow position: | chr6:17049858-17050388 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 101 |
| Conread position: | 23-435 |
| Cow position: | chr6:50114185-50114609 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 32-480 |
| Cow position: | chr6:4903302-4902847 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 34 |
| Conread position: | 32-550 |
| Cow position: | chr6:47340004-47339470 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 98 |
| Conread position: | 35-552 |
| Cow position: | chr6:33508952-33509461 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 102 |
| Conread position: | 36-441 |
| Cow position: | chr6:26914452-26914867 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 140 |
| Conread position: | 51-472 |
| Cow position: | chr6:42131464-42131016 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 115 |
| Conread position: | 53-558 |
| Cow position: | chr6:10332745-10332210 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 284 |
| Conread position: | 131-558 |
| Cow position: | chr6:46465283-46465714 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 67 |
| Conread position: | 138-554 |
| Cow position: | chr6:6068228-6067795 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 147-574 |
| Cow position: | chr6:10612322-10612763 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 288 |
| Conread position: | 152-561 |
| Cow position: | chr6:42106572-42106164 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 155-523 |
| Cow position: | chr6:38233481-38233834 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 166-558 |
| Cow position: | chr6:17414963-17414566 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 178-552 |
| Cow position: | chr6:41470563-41470947 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 147 |
| Conread position: | 183-563 |
| Cow position: | chr6:52478942-52478536 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 150 |
| Conread position: | 197-532 |
| Cow position: | chr6:62015161-62015505 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 203-522 |
| Cow position: | chr6:58370091-58370427 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 203-574 |
| Cow position: | chr6:61575117-61575505 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 204-552 |
| Cow position: | chr6:55720840-55721198 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 209-552 |
| Cow position: | chr6:44098617-44098964 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 118 |
| Conread position: | 214-455 |
| Cow position: | chr6:47640966-47640714 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 48, 117 |
| Conread position: | 214-484 |
| Cow position: | chr6:50755557-50755835 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 222-511 |
| Cow position: | chr6:18955491-18955194 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 259-552 |
| Cow position: | chr6:36652017-36652299 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 47, 75 |
| Conread position: | 260-465 |
| Cow position: | chr6:3484662-3484463 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-479 |
| Cow position: | chr6:12648120-12648341 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 260-547 |
| Cow position: | chr6:31636100-31635810 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 260-550 |
| Cow position: | chr6:18049431-18049148 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-552 |
| Cow position: | chr6:6578180-6577894 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-552 |
| Cow position: | chr6:62925406-62925113 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 260-554 |
| Cow position: | chr6:52216161-52215873 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 178, 49 |
| Conread position: | 260-554 |
| Cow position: | chr6:52235652-52235364 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 178, 49 |
| Conread position: | 260-574 |
| Cow position: | chr6:10682336-10682649 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 260-574 |
| Cow position: | chr6:24327547-24327241 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 260-574 |
| Cow position: | chr6:49399023-49398716 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 260-574 |
| Cow position: | chr6:64097057-64096749 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 261-468 |
| Cow position: | chr6:19695137-19695338 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 261-548 |
| Cow position: | chr6:48169540-48169820 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 264-517 |
| Cow position: | chr6:35103724-35103483 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 264-532 |
| Cow position: | chr6:56651920-56651660 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 44 |
| Conread position: | 264-537 |
| Cow position: | chr6:60017671-60017934 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 255, 47 |
| Conread position: | 277-574 |
| Cow position: | chr6:17090198-17090497 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 137, 155 |
| Conread position: | 281-551 |
| Cow position: | chr6:11789011-11789281 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 32 |
Show alignments to all cow chromosomes.