Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-315
Cow position: chr7:13928819-13928490 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 1-412
Cow position: chr7:54186855-54186427 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 331

Conread position: 1-434
Cow position: chr7:26737998-26737553 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 43

Conread position: 1-438
Cow position: chr7:65819174-65818724 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 178

Conread position: 1-439
Cow position: chr7:19069248-19068795 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 331

Conread position: 1-471
Cow position: chr7:34082983-34083479 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 1-544
Cow position: chr7:26837966-26838534 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 223

Conread position: 1-554
Cow position: chr7:19466945-19466383 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 331

Conread position: 1-562
Cow position: chr7:56887459-56886891 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 335

Conread position: 1-572
Cow position: chr7:12659674-12659095 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 48

Conread position: 1-574
Cow position: chr7:3297125-3296535 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 331

Conread position: 1-574
Cow position: chr7:20779454-20780052 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 222

Conread position: 1-574
Cow position: chr7:23099723-23099138 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 67

Conread position: 1-574
Cow position: chr7:35110887-35111476 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 337

Conread position: 1-574
Cow position: chr7:59437783-59438371 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 256

Conread position: 2-455
Cow position: chr7:58866886-58867363 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 262

Conread position: 2-550
Cow position: chr7:42296750-42296189 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 328

Conread position: 2-574
Cow position: chr7:48666727-48667326 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 165

Conread position: 3-438
Cow position: chr7:40404822-40405272 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 330

Conread position: 3-464
Cow position: chr7:47045775-47046239 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 328

Conread position: 3-552
Cow position: chr7:29509297-29509836 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 126

Conread position: 3-552
Cow position: chr7:30115401-30114849 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 72

Conread position: 3-555
Cow position: chr7:21315439-21315994 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 19

Conread position: 3-574
Cow position: chr7:10427870-10427282 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 331

Conread position: 3-574
Cow position: chr7:32239948-32240533 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 176

Conread position: 3-574
Cow position: chr7:39325089-39325646 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 89

Conread position: 5-463
Cow position: chr7:47876465-47875987 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 41

Conread position: 6-574
Cow position: chr7:58302626-58302039 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 330

Conread position: 14-574
Cow position: chr7:36745640-36746223 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 322

Conread position: 16-552
Cow position: chr7:23276941-23276390 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 156

Conread position: 32-552
Cow position: chr7:19798587-19798050 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 304

Conread position: 37-554
Cow position: chr7:62602561-62603067 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 45

Conread position: 37-574
Cow position: chr7:1721617-1721069 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 147

Conread position: 49-542
Cow position: chr7:1943649-1944150 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 106

Conread position: 65-574
Cow position: chr7:46857576-46857056 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 269

Conread position: 87-494
Cow position: chr7:9929018-9928585 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 131

Conread position: 90-539
Cow position: chr7:53034915-53034444 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 246

Conread position: 92-465
Cow position: chr7:33280806-33280417 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 242

Conread position: 92-552
Cow position: chr7:43907621-43908089 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 84

Conread position: 131-451
Cow position: chr7:41444786-41445107 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 94

Conread position: 131-555
Cow position: chr7:18872667-18873098 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 193

Conread position: 131-558
Cow position: chr7:38400536-38400973 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 28

Conread position: 131-572
Cow position: chr7:15654621-15654174 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 108

Conread position: 133-565
Cow position: chr7:59877889-59878330 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 195

Conread position: 137-552
Cow position: chr7:26632354-26631929 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 63

Conread position: 138-307
Cow position: chr7:51872250-51872067 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 0

Conread position: 138-455
Cow position: chr7:45955362-45955694 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 77, 0

Conread position: 138-523
Cow position: chr7:43940798-43941193 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 187

Conread position: 139-554
Cow position: chr7:53361921-53361494 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 190

Conread position: 139-555
Cow position: chr7:45098991-45099421 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 286
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 70, 202

Conread position: 139-574
Cow position: chr7:21572747-21573186 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 193

Conread position: 139-574
Cow position: chr7:35778912-35779353 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 184

Conread position: 142-542
Cow position: chr7:51420722-51421132 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 70, 183

Conread position: 147-532
Cow position: chr7:28427493-28427878 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 40

Conread position: 148-574
Cow position: chr7:26011881-26012328 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 283

Conread position: 154-552
Cow position: chr7:48243151-48243556 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 175

Conread position: 157-536
Cow position: chr7:29121258-29121650 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 178

Conread position: 160-518
Cow position: chr7:53772826-53772466 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 268
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 174

Conread position: 161-550
Cow position: chr7:39903591-39903980 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 162

Conread position: 162-552
Cow position: chr7:13645879-13645472 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 165

Conread position: 169-565
Cow position: chr7:5283569-5283975 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 156

Conread position: 172-574
Cow position: chr7:31171455-31171048 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 155

Conread position: 174-574
Cow position: chr7:25414892-25415299 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 176-521
Cow position: chr7:11783922-11783568 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 14

Conread position: 184-574
Cow position: chr7:32894748-32894346 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 143

Conread position: 203-493
Cow position: chr7:55085506-55085212 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 203-513
Cow position: chr7:68772973-68772652 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 7

Conread position: 203-532
Cow position: chr7:10760333-10759997 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 211-553
Cow position: chr7:39498488-39498136 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 278

Conread position: 214-459
Cow position: chr7:4840377-4840625 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 43, 109

Conread position: 214-562
Cow position: chr7:14631912-14632269 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 112

Conread position: 214-573
Cow position: chr7:68050650-68051001 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 108

Conread position: 214-574
Cow position: chr7:23206097-23205726 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 215-451
Cow position: chr7:29302847-29302604 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 109

Conread position: 260-443
Cow position: chr7:42894008-42894191 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 260-520
Cow position: chr7:38901729-38901985 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 217, 49

Conread position: 260-552
Cow position: chr7:18388800-18388516 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 49

Conread position: 260-554
Cow position: chr7:37568625-37568914 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 53

Conread position: 260-554
Cow position: chr7:49942816-49942542 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 260-558
Cow position: chr7:23646204-23646491 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-558
Cow position: chr7:46117053-46116763 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 53

Conread position: 260-562
Cow position: chr7:47775468-47775758 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-563
Cow position: chr7:49820985-49820696 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 0

Conread position: 260-565
Cow position: chr7:41328424-41328143 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 43, 58

Conread position: 260-569
Cow position: chr7:23619488-23619187 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 261-574
Cow position: chr7:23818533-23818835 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 64

Conread position: 264-574
Cow position: chr7:36569463-36569750 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 87, 49

Conread position: 275-547
Cow position: chr7:44039106-44039369 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 277-574
Cow position: chr7:3728701-3728991 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 298-554
Cow position: chr7:2172385-2172641 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.