Cow genome map


           Conread name:
           rfcc33b_d9.y1
        

               Conread position:
               1-315
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               1-412
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 331
               

               Conread position:
               1-434
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 43
               

               Conread position:
               1-438
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 178
               

               Conread position:
               1-439
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 331
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 79
               

               Conread position:
               1-544
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 223
               

               Conread position:
               1-554
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 331
               

               Conread position:
               1-562
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 335
               

               Conread position:
               1-572
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 48
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 331
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 222
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 67
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 337
               

               Conread position:
               1-574
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 256
               

               Conread position:
               2-455
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 262
               

               Conread position:
               2-550
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 328
               

               Conread position:
               2-574
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 165
               

               Conread position:
               3-438
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 330
               

               Conread position:
               3-464
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 328
               

               Conread position:
               3-552
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 126
               

               Conread position:
               3-552
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 72
               

               Conread position:
               3-555
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 19
               

               Conread position:
               3-574
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 331
               

               Conread position:
               3-574
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 176
               

               Conread position:
               3-574
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 89
               

               Conread position:
               5-463
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 41
               

               Conread position:
               6-574
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 330
               

               Conread position:
               14-574
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 322
               

               Conread position:
               16-552
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 156
               

               Conread position:
               32-552
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 304
               

               Conread position:
               37-554
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 45
               

               Conread position:
               37-574
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 147
               

               Conread position:
               49-542
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 106
               

               Conread position:
               65-574
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 269
               

               Conread position:
               87-494
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 131
               

               Conread position:
               90-539
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 246
               

               Conread position:
               92-465
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 242
               

               Conread position:
               92-552
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 84
               

               Conread position:
               131-451
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               68, 94
               

               Conread position:
               131-555
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 193
               

               Conread position:
               131-558
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 28
               

               Conread position:
               131-572
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 108
               

               Conread position:
               133-565
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 195
               

               Conread position:
               137-552
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 63
               

               Conread position:
               138-307
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               138-455
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               233
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               138-523
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 187
               

               Conread position:
               139-554
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 190
               

               Conread position:
               139-555
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               286
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               70, 202
               

               Conread position:
               139-574
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 193
               

               Conread position:
               139-574
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 184
               

               Conread position:
               142-542
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               70, 183
               

               Conread position:
               147-532
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               71, 40
               

               Conread position:
               148-574
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 283
               

               Conread position:
               154-552
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 175
               

               Conread position:
               157-536
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 178
               

               Conread position:
               160-518
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               56, 174
               

               Conread position:
               161-550
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 162
               

               Conread position:
               162-552
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 165
               

               Conread position:
               169-565
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 156
               

               Conread position:
               172-574
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 155
               

               Conread position:
               174-574
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 156
               

               Conread position:
               176-521
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               184-574
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               203-493
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 7
               

               Conread position:
               203-513
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               203-532
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 7
               

               Conread position:
               211-553
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 278
               

               Conread position:
               214-459
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               43, 109
               

               Conread position:
               214-562
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 112
               

               Conread position:
               214-573
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               48, 108
               

               Conread position:
               214-574
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 119
               

               Conread position:
               215-451
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               47, 109
               

               Conread position:
               260-443
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               260-520
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               217, 49
               

               Conread position:
               260-552
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 49
               

               Conread position:
               260-554
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 53
               

               Conread position:
               260-554
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               260-558
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               260-558
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 53
               

               Conread position:
               260-562
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               260-563
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               260-565
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               43, 58
               

               Conread position:
               260-569
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               261-574
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               264-574
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               87, 49
               

               Conread position:
               275-547
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               277-574
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               298-554
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.