Cow genome map
Conread name: | rfcc33b_d9.y1 |
Conread position: | 1-441 |
Cow position: | chr8:36858861-36858396 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 344 |
Conread position: | 1-451 |
Cow position: | chr8:38043396-38042924 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 335 |
Conread position: | 1-465 |
Cow position: | chr8:11118220-11117739 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 210 |
Conread position: | 1-471 |
Cow position: | chr8:53838669-53839152 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 330 |
Conread position: | 1-523 |
Cow position: | chr8:27152690-27152161 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 12 |
Conread position: | 1-552 |
Cow position: | chr8:33045265-33044697 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-574 |
Cow position: | chr8:10739838-10739257 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 253 |
Conread position: | 1-574 |
Cow position: | chr8:32966858-32967447 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 164 |
Conread position: | 1-574 |
Cow position: | chr8:33407550-33406975 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 183 |
Conread position: | 2-574 |
Cow position: | chr8:28884085-28884699 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 339 |
Conread position: | 2-574 |
Cow position: | chr8:46480575-46479996 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 332 |
Conread position: | 3-455 |
Cow position: | chr8:24868482-24868020 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 172 |
Conread position: | 3-468 |
Cow position: | chr8:8914462-8914945 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 35 |
Conread position: | 3-558 |
Cow position: | chr8:33993454-33994019 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 331 |
Conread position: | 4-560 |
Cow position: | chr8:15973191-15972627 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 43 |
Conread position: | 4-574 |
Cow position: | chr8:53320259-53320849 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 31 |
Conread position: | 5-574 |
Cow position: | chr8:12094074-12094665 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 381 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 17, 337 |
Conread position: | 5-574 |
Cow position: | chr8:48955200-48955785 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 12 |
Conread position: | 6-552 |
Cow position: | chr8:51702300-51702853 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 153 |
Conread position: | 7-560 |
Cow position: | chr8:21224784-21224210 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 321 |
Conread position: | 12-562 |
Cow position: | chr8:28987017-28987565 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 408 |
Conread position: | 26-551 |
Cow position: | chr8:56424245-56423728 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 333 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 104, 122 |
Conread position: | 32-552 |
Cow position: | chr8:11605641-11606185 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 316 |
Conread position: | 42-552 |
Cow position: | chr8:16414040-16414547 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 279 |
Conread position: | 51-550 |
Cow position: | chr8:3446742-3446235 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 283 |
Conread position: | 51-552 |
Cow position: | chr8:1472385-1472912 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 41 |
Conread position: | 75-574 |
Cow position: | chr8:13975243-13975766 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 351 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 59, 94 |
Conread position: | 130-574 |
Cow position: | chr8:36649030-36648588 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 199 |
Conread position: | 131-464 |
Cow position: | chr8:28669803-28670145 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 30 |
Conread position: | 131-552 |
Cow position: | chr8:1303331-1303756 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 196 |
Conread position: | 131-552 |
Cow position: | chr8:24372290-24371865 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 204 |
Conread position: | 138-574 |
Cow position: | chr8:47861504-47861066 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 52 |
Conread position: | 139-554 |
Cow position: | chr8:50708476-50708901 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 188 |
Conread position: | 140-442 |
Cow position: | chr8:20080663-20080351 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 187 |
Conread position: | 146-574 |
Cow position: | chr8:19996285-19995857 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 19 |
Conread position: | 150-460 |
Cow position: | chr8:37391966-37391647 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 237 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 10, 182 |
Conread position: | 154-435 |
Cow position: | chr8:27600736-27601025 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 205 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 108, 171 |
Conread position: | 154-544 |
Cow position: | chr8:16939007-16938606 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 171 |
Conread position: | 162-552 |
Cow position: | chr8:28321426-28321827 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 165 |
Conread position: | 164-574 |
Cow position: | chr8:19998630-19998211 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 163 |
Conread position: | 165-441 |
Cow position: | chr8:34400366-34400650 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 216 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 50, 157 |
Conread position: | 166-563 |
Cow position: | chr8:21206342-21206739 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 161 |
Conread position: | 166-574 |
Cow position: | chr8:54051769-54052178 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 158 |
Conread position: | 169-574 |
Cow position: | chr8:28379322-28378911 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 67 |
Conread position: | 175-555 |
Cow position: | chr8:10337564-10337174 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 152 |
Conread position: | 185-453 |
Cow position: | chr8:17180606-17180333 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 203 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 24, 142 |
Conread position: | 203-573 |
Cow position: | chr8:55726769-55726402 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 7 |
Conread position: | 214-532 |
Cow position: | chr8:57042614-57042286 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 105 |
Conread position: | 214-559 |
Cow position: | chr8:39807430-39807088 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 119 |
Conread position: | 218-554 |
Cow position: | chr8:36398406-36398063 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 105 |
Conread position: | 221-574 |
Cow position: | chr8:3891927-3891553 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 134 |
Conread position: | 260-435 |
Cow position: | chr8:19368093-19367924 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 132 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 260-443 |
Cow position: | chr8:53787827-53788004 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 129 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-444 |
Cow position: | chr8:42794784-42794607 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 134 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 260-491 |
Cow position: | chr8:39592066-39592280 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 164 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 217, 53 |
Conread position: | 260-539 |
Cow position: | chr8:52230143-52229872 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-547 |
Cow position: | chr8:5877091-5877371 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 260-552 |
Cow position: | chr8:26650871-26651154 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 260-552 |
Cow position: | chr8:53965180-53964889 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 211 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 162, 49 |
Conread position: | 260-562 |
Cow position: | chr8:38893572-38893868 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 49 |
Conread position: | 260-563 |
Cow position: | chr8:672918-673211 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-565 |
Cow position: | chr8:21154247-21153948 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 215 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 260-574 |
Cow position: | chr8:18730003-18730309 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 57 |
Conread position: | 260-574 |
Cow position: | chr8:24980257-24980568 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 51 |
Conread position: | 260-574 |
Cow position: | chr8:25387524-25387835 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 53 |
Conread position: | 260-574 |
Cow position: | chr8:32621430-32621123 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 250, 51 |
Conread position: | 261-443 |
Cow position: | chr8:18830950-18831125 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 136 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 262-550 |
Cow position: | chr8:46952099-46952376 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 264-554 |
Cow position: | chr8:28120287-28119997 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 196 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 190, 174 |
Conread position: | 264-572 |
Cow position: | chr8:14947738-14947435 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 49 |
Conread position: | 283-558 |
Cow position: | chr8:11078450-11078727 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 198 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 127, 0 |
Show alignments to all cow chromosomes.