Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-441
Cow position: chr8:36858861-36858396 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 344

Conread position: 1-451
Cow position: chr8:38043396-38042924 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 335

Conread position: 1-465
Cow position: chr8:11118220-11117739 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 210

Conread position: 1-471
Cow position: chr8:53838669-53839152 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 330

Conread position: 1-523
Cow position: chr8:27152690-27152161 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 12

Conread position: 1-552
Cow position: chr8:33045265-33044697 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-574
Cow position: chr8:10739838-10739257 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 253

Conread position: 1-574
Cow position: chr8:32966858-32967447 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 164

Conread position: 1-574
Cow position: chr8:33407550-33406975 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 183

Conread position: 2-574
Cow position: chr8:28884085-28884699 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 339

Conread position: 2-574
Cow position: chr8:46480575-46479996 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 332

Conread position: 3-455
Cow position: chr8:24868482-24868020 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 172

Conread position: 3-468
Cow position: chr8:8914462-8914945 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 35

Conread position: 3-558
Cow position: chr8:33993454-33994019 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 331

Conread position: 4-560
Cow position: chr8:15973191-15972627 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 43

Conread position: 4-574
Cow position: chr8:53320259-53320849 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 31

Conread position: 5-574
Cow position: chr8:12094074-12094665 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 381
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 337

Conread position: 5-574
Cow position: chr8:48955200-48955785 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 12

Conread position: 6-552
Cow position: chr8:51702300-51702853 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 153

Conread position: 7-560
Cow position: chr8:21224784-21224210 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 321

Conread position: 12-562
Cow position: chr8:28987017-28987565 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 408

Conread position: 26-551
Cow position: chr8:56424245-56423728 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 333
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 104, 122

Conread position: 32-552
Cow position: chr8:11605641-11606185 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 316

Conread position: 42-552
Cow position: chr8:16414040-16414547 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 279

Conread position: 51-550
Cow position: chr8:3446742-3446235 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 283

Conread position: 51-552
Cow position: chr8:1472385-1472912 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 41

Conread position: 75-574
Cow position: chr8:13975243-13975766 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 351
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 59, 94

Conread position: 130-574
Cow position: chr8:36649030-36648588 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 199

Conread position: 131-464
Cow position: chr8:28669803-28670145 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 30

Conread position: 131-552
Cow position: chr8:1303331-1303756 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 196

Conread position: 131-552
Cow position: chr8:24372290-24371865 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 204

Conread position: 138-574
Cow position: chr8:47861504-47861066 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 52

Conread position: 139-554
Cow position: chr8:50708476-50708901 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 188

Conread position: 140-442
Cow position: chr8:20080663-20080351 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 187

Conread position: 146-574
Cow position: chr8:19996285-19995857 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 19

Conread position: 150-460
Cow position: chr8:37391966-37391647 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 182

Conread position: 154-435
Cow position: chr8:27600736-27601025 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 171

Conread position: 154-544
Cow position: chr8:16939007-16938606 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 171

Conread position: 162-552
Cow position: chr8:28321426-28321827 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 165

Conread position: 164-574
Cow position: chr8:19998630-19998211 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 163

Conread position: 165-441
Cow position: chr8:34400366-34400650 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 50, 157

Conread position: 166-563
Cow position: chr8:21206342-21206739 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 161

Conread position: 166-574
Cow position: chr8:54051769-54052178 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 158

Conread position: 169-574
Cow position: chr8:28379322-28378911 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 67

Conread position: 175-555
Cow position: chr8:10337564-10337174 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 152

Conread position: 185-453
Cow position: chr8:17180606-17180333 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 142

Conread position: 203-573
Cow position: chr8:55726769-55726402 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 214-532
Cow position: chr8:57042614-57042286 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 105

Conread position: 214-559
Cow position: chr8:39807430-39807088 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 218-554
Cow position: chr8:36398406-36398063 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 105

Conread position: 221-574
Cow position: chr8:3891927-3891553 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 134

Conread position: 260-435
Cow position: chr8:19368093-19367924 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 260-443
Cow position: chr8:53787827-53788004 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 260-444
Cow position: chr8:42794784-42794607 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 260-491
Cow position: chr8:39592066-39592280 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 217, 53

Conread position: 260-539
Cow position: chr8:52230143-52229872 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-547
Cow position: chr8:5877091-5877371 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 260-552
Cow position: chr8:26650871-26651154 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-552
Cow position: chr8:53965180-53964889 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 162, 49

Conread position: 260-562
Cow position: chr8:38893572-38893868 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 49

Conread position: 260-563
Cow position: chr8:672918-673211 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-565
Cow position: chr8:21154247-21153948 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 0

Conread position: 260-574
Cow position: chr8:18730003-18730309 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 57

Conread position: 260-574
Cow position: chr8:24980257-24980568 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 51

Conread position: 260-574
Cow position: chr8:25387524-25387835 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 53

Conread position: 260-574
Cow position: chr8:32621430-32621123 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 51

Conread position: 261-443
Cow position: chr8:18830950-18831125 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 262-550
Cow position: chr8:46952099-46952376 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 264-554
Cow position: chr8:28120287-28119997 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 190, 174

Conread position: 264-572
Cow position: chr8:14947738-14947435 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 49

Conread position: 283-558
Cow position: chr8:11078450-11078727 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 127, 0

Show alignments to all cow chromosomes.