Cow genome map
Conread name: | rfcc33b_d9.y1 |
Conread position: | 1-465 |
Cow position: | chr9:23540692-23541170 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 43 |
Conread position: | 1-488 |
Cow position: | chr9:34900871-34901353 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 110 |
Conread position: | 1-544 |
Cow position: | chr9:44920659-44921209 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 43 |
Conread position: | 1-552 |
Cow position: | chr9:36025714-36025146 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-555 |
Cow position: | chr9:19155894-19155326 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 332 |
Conread position: | 1-558 |
Cow position: | chr9:52753830-52753258 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 333 |
Conread position: | 1-565 |
Cow position: | chr9:217723-217138 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 116 |
Conread position: | 1-565 |
Cow position: | chr9:13620606-13620025 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 331 |
Conread position: | 1-565 |
Cow position: | chr9:47171444-47172028 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 331 |
Conread position: | 1-574 |
Cow position: | chr9:1519972-1520563 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 333 |
Conread position: | 1-574 |
Cow position: | chr9:1991163-1990570 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 332 |
Conread position: | 1-574 |
Cow position: | chr9:14003367-14003956 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 331 |
Conread position: | 1-574 |
Cow position: | chr9:15805169-15805754 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 193 |
Conread position: | 1-574 |
Cow position: | chr9:22361769-22361182 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 37 |
Conread position: | 1-574 |
Cow position: | chr9:22656189-22656779 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 333 |
Conread position: | 2-480 |
Cow position: | chr9:48774083-48773585 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 16 |
Conread position: | 2-539 |
Cow position: | chr9:20901382-20901926 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 158 |
Conread position: | 2-565 |
Cow position: | chr9:2715690-2715115 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 60 |
Conread position: | 2-574 |
Cow position: | chr9:13181301-13181888 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 327 |
Conread position: | 3-552 |
Cow position: | chr9:37017634-37017073 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 67 |
Conread position: | 3-562 |
Cow position: | chr9:1856030-1855459 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 73 |
Conread position: | 3-572 |
Cow position: | chr9:20393372-20393957 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 78 |
Conread position: | 4-562 |
Cow position: | chr9:34696541-34697116 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 40 |
Conread position: | 4-565 |
Cow position: | chr9:6886972-6887552 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 328 |
Conread position: | 5-557 |
Cow position: | chr9:21459409-21459974 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 329 |
Conread position: | 45-565 |
Cow position: | chr9:26518121-26518660 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 287 |
Conread position: | 46-543 |
Cow position: | chr9:26115141-26115649 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 114 |
Conread position: | 48-555 |
Cow position: | chr9:5161363-5161880 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 158 |
Conread position: | 48-574 |
Cow position: | chr9:9723178-9723713 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 131 |
Conread position: | 52-574 |
Cow position: | chr9:20407330-20406805 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 40 |
Conread position: | 64-511 |
Cow position: | chr9:35129518-35129053 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 270 |
Conread position: | 69-421 |
Cow position: | chr9:41958340-41957986 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 240 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 66, 152 |
Conread position: | 69-435 |
Cow position: | chr9:9822566-9822943 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 250 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 62, 179 |
Conread position: | 73-508 |
Cow position: | chr9:56531540-56531094 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 259 |
Conread position: | 73-552 |
Cow position: | chr9:56530091-56529595 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 259 |
Conread position: | 81-558 |
Cow position: | chr9:31076994-31077495 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 262 |
Conread position: | 85-468 |
Cow position: | chr9:51621381-51620974 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 264 |
Conread position: | 85-539 |
Cow position: | chr9:7634929-7634469 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 79 |
Conread position: | 88-565 |
Cow position: | chr9:35304224-35304718 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 244 |
Conread position: | 92-574 |
Cow position: | chr9:15982416-15982911 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 242 |
Conread position: | 100-555 |
Cow position: | chr9:32236917-32236446 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 233 |
Conread position: | 130-552 |
Cow position: | chr9:53603031-53602602 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 38 |
Conread position: | 131-552 |
Cow position: | chr9:6089723-6089287 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 196 |
Conread position: | 131-552 |
Cow position: | chr9:23388057-23388489 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 200 |
Conread position: | 131-552 |
Cow position: | chr9:27994330-27993899 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 194 |
Conread position: | 131-552 |
Cow position: | chr9:61023195-61022797 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 394, 85 |
Conread position: | 131-572 |
Cow position: | chr9:6880367-6879939 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 85 |
Conread position: | 133-451 |
Cow position: | chr9:8338660-8338340 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 75 |
Conread position: | 138-528 |
Cow position: | chr9:41932690-41932283 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 190 |
Conread position: | 139-574 |
Cow position: | chr9:18252320-18252756 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 21 |
Conread position: | 143-573 |
Cow position: | chr9:20816448-20816017 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 17 |
Conread position: | 148-552 |
Cow position: | chr9:24726076-24726489 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 179 |
Conread position: | 150-574 |
Cow position: | chr9:2717860-2718291 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 73 |
Conread position: | 154-480 |
Cow position: | chr9:51692051-51691714 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 167 |
Conread position: | 155-429 |
Cow position: | chr9:33067813-33067529 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 214 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 61, 172 |
Conread position: | 160-563 |
Cow position: | chr9:22617208-22616801 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 33 |
Conread position: | 169-552 |
Cow position: | chr9:28244935-28244542 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 156 |
Conread position: | 169-552 |
Cow position: | chr9:28293112-28292719 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 156 |
Conread position: | 172-438 |
Cow position: | chr9:10143854-10144131 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 201 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 44, 156 |
Conread position: | 181-558 |
Cow position: | chr9:32265831-32266204 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 62 |
Conread position: | 186-427 |
Cow position: | chr9:58133403-58133658 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 181 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 30, 154 |
Conread position: | 192-574 |
Cow position: | chr9:28746970-28747354 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 18 |
Conread position: | 203-518 |
Cow position: | chr9:44500299-44500616 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 234 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 57, 7 |
Conread position: | 203-544 |
Cow position: | chr9:45284998-45285334 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 249 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 60, 123 |
Conread position: | 214-552 |
Cow position: | chr9:29007102-29006750 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 119 |
Conread position: | 214-555 |
Cow position: | chr9:38183943-38184292 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 113 |
Conread position: | 215-554 |
Cow position: | chr9:7410313-7409969 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 115 |
Conread position: | 217-552 |
Cow position: | chr9:28948391-28948041 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 114 |
Conread position: | 257-453 |
Cow position: | chr9:8724305-8724106 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 137 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 81, 0 |
Conread position: | 260-444 |
Cow position: | chr9:55983256-55983433 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 130 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-455 |
Cow position: | chr9:35305608-35305801 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 140 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 177, 0 |
Conread position: | 260-457 |
Cow position: | chr9:34918808-34919000 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 146 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 89, 51 |
Conread position: | 260-484 |
Cow position: | chr9:32071104-32070886 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 170 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 260-544 |
Cow position: | chr9:18008392-18008670 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 172, 0 |
Conread position: | 260-547 |
Cow position: | chr9:41789771-41789473 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 218 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 112, 51 |
Conread position: | 260-547 |
Cow position: | chr9:57950837-57951135 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 156 |
Conread position: | 260-558 |
Cow position: | chr9:37069069-37069386 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 223 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 260-570 |
Cow position: | chr9:62360754-62361058 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 212 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-572 |
Cow position: | chr9:10308536-10308840 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 58 |
Conread position: | 260-572 |
Cow position: | chr9:56031860-56032156 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-573 |
Cow position: | chr9:8937624-8937316 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 51 |
Conread position: | 260-574 |
Cow position: | chr9:31124448-31124756 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 297, 51 |
Conread position: | 260-574 |
Cow position: | chr9:35375896-35375595 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 225 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 261-442 |
Cow position: | chr9:10876610-10876789 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 132 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 144, 50 |
Conread position: | 261-552 |
Cow position: | chr9:5246320-5246038 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 264-490 |
Cow position: | chr9:4126516-4126299 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 168 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 264-552 |
Cow position: | chr9:38032658-38032961 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 210 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 284-574 |
Cow position: | chr9:214006-214297 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 192 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 49, 32 |
Show alignments to all cow chromosomes.