Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-465
Cow position: chr9:23540692-23541170 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 43

Conread position: 1-488
Cow position: chr9:34900871-34901353 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 110

Conread position: 1-544
Cow position: chr9:44920659-44921209 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 43

Conread position: 1-552
Cow position: chr9:36025714-36025146 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-555
Cow position: chr9:19155894-19155326 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 332

Conread position: 1-558
Cow position: chr9:52753830-52753258 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 333

Conread position: 1-565
Cow position: chr9:217723-217138 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 116

Conread position: 1-565
Cow position: chr9:13620606-13620025 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-565
Cow position: chr9:47171444-47172028 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 331

Conread position: 1-574
Cow position: chr9:1519972-1520563 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 333

Conread position: 1-574
Cow position: chr9:1991163-1990570 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 332

Conread position: 1-574
Cow position: chr9:14003367-14003956 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 331

Conread position: 1-574
Cow position: chr9:15805169-15805754 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 193

Conread position: 1-574
Cow position: chr9:22361769-22361182 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 37

Conread position: 1-574
Cow position: chr9:22656189-22656779 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 333

Conread position: 2-480
Cow position: chr9:48774083-48773585 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 16

Conread position: 2-539
Cow position: chr9:20901382-20901926 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 158

Conread position: 2-565
Cow position: chr9:2715690-2715115 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 60

Conread position: 2-574
Cow position: chr9:13181301-13181888 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 327

Conread position: 3-552
Cow position: chr9:37017634-37017073 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 67

Conread position: 3-562
Cow position: chr9:1856030-1855459 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 73

Conread position: 3-572
Cow position: chr9:20393372-20393957 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 4-562
Cow position: chr9:34696541-34697116 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 40

Conread position: 4-565
Cow position: chr9:6886972-6887552 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 328

Conread position: 5-557
Cow position: chr9:21459409-21459974 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 329

Conread position: 45-565
Cow position: chr9:26518121-26518660 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 287

Conread position: 46-543
Cow position: chr9:26115141-26115649 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 114

Conread position: 48-555
Cow position: chr9:5161363-5161880 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 158

Conread position: 48-574
Cow position: chr9:9723178-9723713 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 131

Conread position: 52-574
Cow position: chr9:20407330-20406805 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 40

Conread position: 64-511
Cow position: chr9:35129518-35129053 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 270

Conread position: 69-421
Cow position: chr9:41958340-41957986 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 240
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 66, 152

Conread position: 69-435
Cow position: chr9:9822566-9822943 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 250
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 62, 179

Conread position: 73-508
Cow position: chr9:56531540-56531094 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 259

Conread position: 73-552
Cow position: chr9:56530091-56529595 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 259

Conread position: 81-558
Cow position: chr9:31076994-31077495 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 262

Conread position: 85-468
Cow position: chr9:51621381-51620974 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 264

Conread position: 85-539
Cow position: chr9:7634929-7634469 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 79

Conread position: 88-565
Cow position: chr9:35304224-35304718 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 244

Conread position: 92-574
Cow position: chr9:15982416-15982911 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 242

Conread position: 100-555
Cow position: chr9:32236917-32236446 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 233

Conread position: 130-552
Cow position: chr9:53603031-53602602 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 38

Conread position: 131-552
Cow position: chr9:6089723-6089287 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 196

Conread position: 131-552
Cow position: chr9:23388057-23388489 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 200

Conread position: 131-552
Cow position: chr9:27994330-27993899 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 194

Conread position: 131-552
Cow position: chr9:61023195-61022797 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 85

Conread position: 131-572
Cow position: chr9:6880367-6879939 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 85

Conread position: 133-451
Cow position: chr9:8338660-8338340 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 75

Conread position: 138-528
Cow position: chr9:41932690-41932283 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 190

Conread position: 139-574
Cow position: chr9:18252320-18252756 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 21

Conread position: 143-573
Cow position: chr9:20816448-20816017 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 17

Conread position: 148-552
Cow position: chr9:24726076-24726489 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 179

Conread position: 150-574
Cow position: chr9:2717860-2718291 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 73

Conread position: 154-480
Cow position: chr9:51692051-51691714 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 167

Conread position: 155-429
Cow position: chr9:33067813-33067529 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 61, 172

Conread position: 160-563
Cow position: chr9:22617208-22616801 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 33

Conread position: 169-552
Cow position: chr9:28244935-28244542 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 156

Conread position: 169-552
Cow position: chr9:28293112-28292719 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 156

Conread position: 172-438
Cow position: chr9:10143854-10144131 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 156

Conread position: 181-558
Cow position: chr9:32265831-32266204 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 186-427
Cow position: chr9:58133403-58133658 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 154

Conread position: 192-574
Cow position: chr9:28746970-28747354 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 18

Conread position: 203-518
Cow position: chr9:44500299-44500616 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 57, 7

Conread position: 203-544
Cow position: chr9:45284998-45285334 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 123

Conread position: 214-552
Cow position: chr9:29007102-29006750 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 214-555
Cow position: chr9:38183943-38184292 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 113

Conread position: 215-554
Cow position: chr9:7410313-7409969 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 115

Conread position: 217-552
Cow position: chr9:28948391-28948041 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 114

Conread position: 257-453
Cow position: chr9:8724305-8724106 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 260-444
Cow position: chr9:55983256-55983433 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 260-455
Cow position: chr9:35305608-35305801 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 177, 0

Conread position: 260-457
Cow position: chr9:34918808-34919000 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 89, 51

Conread position: 260-484
Cow position: chr9:32071104-32070886 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 260-544
Cow position: chr9:18008392-18008670 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 0

Conread position: 260-547
Cow position: chr9:41789771-41789473 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 112, 51

Conread position: 260-547
Cow position: chr9:57950837-57951135 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 260-558
Cow position: chr9:37069069-37069386 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 260-570
Cow position: chr9:62360754-62361058 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 51, 0

Conread position: 260-572
Cow position: chr9:10308536-10308840 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 58

Conread position: 260-572
Cow position: chr9:56031860-56032156 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 260-573
Cow position: chr9:8937624-8937316 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 51

Conread position: 260-574
Cow position: chr9:31124448-31124756 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 51

Conread position: 260-574
Cow position: chr9:35375896-35375595 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 261-442
Cow position: chr9:10876610-10876789 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 50

Conread position: 261-552
Cow position: chr9:5246320-5246038 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 264-490
Cow position: chr9:4126516-4126299 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 264-552
Cow position: chr9:38032658-38032961 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 284-574
Cow position: chr9:214006-214297 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 32

Show alignments to all cow chromosomes.