Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-455 |
| Cow position: | chrX:9854577-9855050 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 43 |
| Conread position: | 1-455 |
| Cow position: | chrX:9953416-9953891 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 1-457 |
| Cow position: | chrX:17663620-17663140 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1-458 |
| Cow position: | chrX:30824947-30825421 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-509 |
| Cow position: | chrX:6406650-6407163 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 1-552 |
| Cow position: | chrX:10923272-10922704 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-558 |
| Cow position: | chrX:23280308-23280879 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 331 |
| Conread position: | 1-562 |
| Cow position: | chrX:41879631-41879057 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 335 |
| Conread position: | 1-565 |
| Cow position: | chrX:36535436-36534855 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 331 |
| Conread position: | 2-441 |
| Cow position: | chrX:35847527-35847971 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 11 |
| Conread position: | 2-463 |
| Cow position: | chrX:4751072-4750601 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 333 |
| Conread position: | 2-487 |
| Cow position: | chrX:17891847-17892345 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 2-552 |
| Cow position: | chrX:4633556-4632985 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 217 |
| Conread position: | 2-552 |
| Cow position: | chrX:10866570-10865999 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 335 |
| Conread position: | 2-552 |
| Cow position: | chrX:11083304-11082747 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 2-565 |
| Cow position: | chrX:29049283-29049846 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 2-574 |
| Cow position: | chrX:12290038-12290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 165 |
| Conread position: | 2-574 |
| Cow position: | chrX:12310085-12309500 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 2-574 |
| Cow position: | chrX:31261334-31260741 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 334 |
| Conread position: | 3-491 |
| Cow position: | chrX:38852460-38852962 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 331 |
| Conread position: | 3-494 |
| Cow position: | chrX:10256839-10256335 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 95 |
| Conread position: | 3-574 |
| Cow position: | chrX:35388607-35388017 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 4-554 |
| Cow position: | chrX:45413349-45412786 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 327 |
| Conread position: | 6-552 |
| Cow position: | chrX:30965405-30965968 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 326 |
| Conread position: | 7-444 |
| Cow position: | chrX:44961028-44961472 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 19-435 |
| Cow position: | chrX:25816936-25816505 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 34-544 |
| Cow position: | chrX:41122404-41122929 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 45-550 |
| Cow position: | chrX:17497439-17497961 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 291 |
| Conread position: | 46-455 |
| Cow position: | chrX:7512836-7513260 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 202 |
| Conread position: | 47-436 |
| Cow position: | chrX:33493075-33493483 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 291 |
| Conread position: | 47-554 |
| Cow position: | chrX:12249140-12249672 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 205 |
| Conread position: | 48-554 |
| Cow position: | chrX:35268242-35268756 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 121 |
| Conread position: | 53-433 |
| Cow position: | chrX:21662455-21662843 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 102 |
| Conread position: | 66-565 |
| Cow position: | chrX:879000-878493 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 106 |
| Conread position: | 66-574 |
| Cow position: | chrX:47144440-47144980 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 359 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 65, 265 |
| Conread position: | 69-574 |
| Cow position: | chrX:32871419-32870898 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 265 |
| Conread position: | 80-562 |
| Cow position: | chrX:39546599-39546097 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 87-443 |
| Cow position: | chrX:16324859-16324489 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 89-565 |
| Cow position: | chrX:7571290-7571786 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 247 |
| Conread position: | 111-552 |
| Cow position: | chrX:20098731-20099189 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 221 |
| Conread position: | 131-552 |
| Cow position: | chrX:35409110-35409526 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 190 |
| Conread position: | 131-565 |
| Cow position: | chrX:10351297-10351741 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 131-574 |
| Cow position: | chrX:38438924-38439363 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 182 |
| Conread position: | 132-574 |
| Cow position: | chrX:14884525-14884073 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 193 |
| Conread position: | 134-554 |
| Cow position: | chrX:38963552-38963975 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 194 |
| Conread position: | 134-574 |
| Cow position: | chrX:28024702-28025150 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 191 |
| Conread position: | 138-565 |
| Cow position: | chrX:19022866-19022429 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 187 |
| Conread position: | 139-450 |
| Cow position: | chrX:6695904-6695580 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 152-552 |
| Cow position: | chrX:2664466-2664876 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 173 |
| Conread position: | 154-455 |
| Cow position: | chrX:41067295-41067609 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 154-550 |
| Cow position: | chrX:20504221-20504627 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 249 |
| Conread position: | 154-555 |
| Cow position: | chrX:32144703-32144293 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 102 |
| Conread position: | 156-444 |
| Cow position: | chrX:20675567-20675859 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 157-452 |
| Cow position: | chrX:3596605-3596300 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 168 |
| Conread position: | 166-574 |
| Cow position: | chrX:20340418-20340003 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 170-574 |
| Cow position: | chrX:9651571-9651157 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 159 |
| Conread position: | 175-543 |
| Cow position: | chrX:42470456-42470079 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 153 |
| Conread position: | 178-555 |
| Cow position: | chrX:3154776-3154377 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 158 |
| Conread position: | 192-550 |
| Cow position: | chrX:2351559-2351927 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 194-455 |
| Cow position: | chrX:31745998-31745727 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 135 |
| Conread position: | 195-480 |
| Cow position: | chrX:12691159-12690864 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 200-560 |
| Cow position: | chrX:21862165-21861795 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 214-443 |
| Cow position: | chrX:13030120-13029883 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 214-540 |
| Cow position: | chrX:11455546-11455199 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 215-550 |
| Cow position: | chrX:18695403-18695055 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 260-453 |
| Cow position: | chrX:27679932-27680127 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 176 |
| Conread position: | 260-513 |
| Cow position: | chrX:13785797-13785544 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 183, 51 |
| Conread position: | 260-517 |
| Cow position: | chrX:47654885-47655132 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-547 |
| Cow position: | chrX:10916329-10916615 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 260-552 |
| Cow position: | chrX:28847301-28847012 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 260-558 |
| Cow position: | chrX:23564216-23563924 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-560 |
| Cow position: | chrX:15486044-15485752 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 51 |
| Conread position: | 260-563 |
| Cow position: | chrX:1616476-1616170 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 260-565 |
| Cow position: | chrX:11663759-11664058 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-574 |
| Cow position: | chrX:14599117-14599418 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 171, 51 |
| Conread position: | 260-574 |
| Cow position: | chrX:34754611-34754303 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 264-481 |
| Cow position: | chrX:25966634-25966852 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 177 |
| Conread position: | 264-515 |
| Cow position: | chrX:42221984-42221742 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 264-554 |
| Cow position: | chrX:1518860-1518570 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-554 |
| Cow position: | chrX:11581522-11581807 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 47 |
| Conread position: | 264-555 |
| Cow position: | chrX:48370680-48370967 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 52 |
| Conread position: | 275-558 |
| Cow position: | chrX:48224592-48224313 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 290-574 |
| Cow position: | chrX:25946231-25945948 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 294-547 |
| Cow position: | chrX:2300540-2300795 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 24 |
Show alignments to all cow chromosomes.