Cow genome map
| Conread name: | rfce15c_d5.y1 |
| Conread position: | 6-264 |
| Cow position: | chr1:55705272-55705019 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 8-276 |
| Cow position: | chr1:54206839-54206573 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 223, 64 |
| Conread position: | 9-236 |
| Cow position: | chr1:79146840-79146614 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 9-264 |
| Cow position: | chr1:23998958-23998695 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 129, 89 |
| Conread position: | 10-248 |
| Cow position: | chr1:56618673-56618444 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 10-266 |
| Cow position: | chr1:1981136-1980879 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 133, 193 |
| Conread position: | 11-229 |
| Cow position: | chr1:58754816-58754605 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-228 |
| Cow position: | chr1:41027057-41027264 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 15-229 |
| Cow position: | chr1:12464682-12464472 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 15-233 |
| Cow position: | chr1:71078978-71078765 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 15-242 |
| Cow position: | chr1:42887295-42887074 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 15-245 |
| Cow position: | chr1:61884895-61885121 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 153, 132 |
| Conread position: | 15-246 |
| Cow position: | chr1:78857347-78857116 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 153, 183 |
| Conread position: | 15-246 |
| Cow position: | chr1:81569046-81568819 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 15-247 |
| Cow position: | chr1:102529875-102529643 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 15-248 |
| Cow position: | chr1:81481400-81481173 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 15-256 |
| Cow position: | chr1:55753233-55753002 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 15-257 |
| Cow position: | chr1:84811957-84811724 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 15-258 |
| Cow position: | chr1:54267955-54267719 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-260 |
| Cow position: | chr1:81290489-81290728 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 153, 67 |
| Conread position: | 15-264 |
| Cow position: | chr1:87197802-87198054 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 200, 133 |
| Conread position: | 15-269 |
| Cow position: | chr1:86682578-86682335 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 16-229 |
| Cow position: | chr1:89448883-89449091 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 152, 129 |
| Conread position: | 16-256 |
| Cow position: | chr1:41056661-41056896 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 148 |
| Conread position: | 17-246 |
| Cow position: | chr1:68855149-68855376 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 17-248 |
| Cow position: | chr1:43505513-43505735 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 17-260 |
| Cow position: | chr1:79003960-79004202 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 151, 70 |
| Conread position: | 17-261 |
| Cow position: | chr1:45315652-45315409 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 151, 131 |
| Conread position: | 19-245 |
| Cow position: | chr1:20104252-20104475 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 20-272 |
| Cow position: | chr1:24133073-24132827 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 218, 58 |
| Conread position: | 35-266 |
| Cow position: | chr1:41138142-41137918 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 42-244 |
| Cow position: | chr1:55685969-55685770 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 42-264 |
| Cow position: | chr1:71946075-71945854 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 111, 165 |
| Conread position: | 42-268 |
| Cow position: | chr1:70483325-70483105 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 48-262 |
| Cow position: | chr1:102730747-102730532 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 106, 156 |
| Conread position: | 88-266 |
| Cow position: | chr1:64811290-64811467 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 81 |
Show alignments to all cow chromosomes.