Cow genome map
| Conread name: | rgul0101_g23.y1 |
| Conread position: | 1-200 |
| Cow position: | chr3:48269068-48269268 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-213 |
| Cow position: | chr3:36571062-36570847 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 1-215 |
| Cow position: | chr3:2537468-2537679 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 1-227 |
| Cow position: | chr3:14438614-14438390 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-227 |
| Cow position: | chr3:32619638-32619414 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 1-232 |
| Cow position: | chr3:18759033-18758804 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 211-468 |
| Cow position: | chr3:54100813-54100542 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 211-472 |
| Cow position: | chr3:48468090-48468351 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 211-472 |
| Cow position: | chr3:71231306-71231573 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 223-463 |
| Cow position: | chr3:57273984-57274224 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 230-390 |
| Cow position: | chr3:73299014-73299177 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 230-470 |
| Cow position: | chr3:48810713-48810465 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 153 |
| Conread position: | 230-472 |
| Cow position: | chr3:45881831-45882074 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 156 |
| Conread position: | 235-474 |
| Cow position: | chr3:37041359-37041593 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 66, 163 |
| Conread position: | 237-467 |
| Cow position: | chr3:7661798-7662027 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 205, 143 |
| Conread position: | 237-473 |
| Cow position: | chr3:3316873-3316632 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 237-473 |
| Cow position: | chr3:81087694-81087460 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 144 |
| Conread position: | 238-472 |
| Cow position: | chr3:53739243-53739007 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 241-472 |
| Cow position: | chr3:3656460-3656690 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 144 |
| Conread position: | 241-472 |
| Cow position: | chr3:15443782-15443551 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 241-472 |
| Cow position: | chr3:65058645-65058874 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 242-400 |
| Cow position: | chr3:56476628-56476792 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 242-472 |
| Cow position: | chr3:78945885-78945646 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 242-473 |
| Cow position: | chr3:47753172-47753413 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 243-460 |
| Cow position: | chr3:53046712-53046495 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 243-467 |
| Cow position: | chr3:10668932-10668709 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 243-470 |
| Cow position: | chr3:65236971-65237196 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 243-472 |
| Cow position: | chr3:48900383-48900155 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 243-473 |
| Cow position: | chr3:59604793-59605018 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 244-400 |
| Cow position: | chr3:10026737-10026583 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 244-473 |
| Cow position: | chr3:9120797-9121018 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 246-389 |
| Cow position: | chr3:27940188-27940046 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 246-472 |
| Cow position: | chr3:22165465-22165240 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 138 |
| Conread position: | 248-468 |
| Cow position: | chr3:71497185-71496958 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 248-472 |
| Cow position: | chr3:62046617-62046846 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 254-472 |
| Cow position: | chr3:5305757-5305978 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 195 |
| Conread position: | 261-476 |
| Cow position: | chr3:70762154-70761944 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 288-472 |
| Cow position: | chr3:68094140-68094327 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 6, 159 |
| Conread position: | 292-473 |
| Cow position: | chr3:29234680-29234502 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 150, 88 |
| Conread position: | 300-472 |
| Cow position: | chr3:21959668-21959840 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 304-473 |
| Cow position: | chr3:83474758-83474930 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.