Cow genome map
| Conread name: | rgul0101_g23.y1 |
| Conread position: | 1-141 |
| Cow position: | chr5:73069516-73069656 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-197 |
| Cow position: | chr5:5924698-5924508 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-200 |
| Cow position: | chr5:14551322-14551122 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 1-213 |
| Cow position: | chr5:52041210-52040998 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-227 |
| Cow position: | chr5:50599336-50599563 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 230-378 |
| Cow position: | chr5:4710170-4710015 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 230-470 |
| Cow position: | chr5:30276674-30276911 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 236-471 |
| Cow position: | chr5:68537674-68537439 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 141 |
| Conread position: | 236-472 |
| Cow position: | chr5:5855851-5856086 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 236-472 |
| Cow position: | chr5:19752297-19752527 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 237-389 |
| Cow position: | chr5:63987453-63987298 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 237-471 |
| Cow position: | chr5:55966889-55966648 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 238-467 |
| Cow position: | chr5:72045682-72045456 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 239-471 |
| Cow position: | chr5:7012854-7012624 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 239-472 |
| Cow position: | chr5:65941257-65941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 129 |
| Conread position: | 241-472 |
| Cow position: | chr5:46512773-46512542 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 242-441 |
| Cow position: | chr5:64027023-64026822 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 141 |
| Conread position: | 242-464 |
| Cow position: | chr5:30845110-30845324 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 128 |
| Conread position: | 242-466 |
| Cow position: | chr5:67932470-67932246 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 242-469 |
| Cow position: | chr5:50101380-50101155 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 242-472 |
| Cow position: | chr5:25035258-25035028 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 242-472 |
| Cow position: | chr5:35208260-35208489 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 242-473 |
| Cow position: | chr5:7044709-7044479 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 242-473 |
| Cow position: | chr5:42064202-42064434 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 242-473 |
| Cow position: | chr5:57074335-57074110 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 139 |
| Conread position: | 243-466 |
| Cow position: | chr5:63234827-63234602 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 243-467 |
| Cow position: | chr5:33273693-33273918 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 243-470 |
| Cow position: | chr5:39447538-39447301 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 243-472 |
| Cow position: | chr5:11668187-11667958 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 244-472 |
| Cow position: | chr5:12557290-12557061 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 245-472 |
| Cow position: | chr5:35969532-35969766 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 248-409 |
| Cow position: | chr5:30949912-30949746 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 290-466 |
| Cow position: | chr5:38079419-38079594 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 298-472 |
| Cow position: | chr5:15770399-15770226 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 107 |
| Conread position: | 299-471 |
| Cow position: | chr5:36038944-36038780 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 300-464 |
| Cow position: | chr5:64843912-64843747 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 143, 85 |
| Conread position: | 300-472 |
| Cow position: | chr5:39815442-39815274 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 300-473 |
| Cow position: | chr5:53175199-53175022 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 305-472 |
| Cow position: | chr5:32975822-32975989 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 138 |
Show alignments to all cow chromosomes.