Cow genome map
| Conread name: | rgul0101_g23.y1 |
| Conread position: | 1-141 |
| Cow position: | chrX:16325273-16325134 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-194 |
| Cow position: | chrX:16517877-16517684 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-195 |
| Cow position: | chrX:38228058-38227863 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 1-203 |
| Cow position: | chrX:44193185-44192983 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 1-215 |
| Cow position: | chrX:40693474-40693251 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 211-390 |
| Cow position: | chrX:32978119-32977935 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 211-466 |
| Cow position: | chrX:15147229-15146977 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 211-473 |
| Cow position: | chrX:20957206-20957466 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 230-441 |
| Cow position: | chrX:31294585-31294374 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 238-383 |
| Cow position: | chrX:23562625-23562775 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 238-461 |
| Cow position: | chrX:32821022-32821257 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 238-472 |
| Cow position: | chrX:3806676-3806907 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 239-469 |
| Cow position: | chrX:35268860-35269081 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 241-463 |
| Cow position: | chrX:20151856-20152067 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 241-472 |
| Cow position: | chrX:9252165-9251935 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 241-472 |
| Cow position: | chrX:18964827-18964606 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 241-472 |
| Cow position: | chrX:20339894-20339667 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 242-400 |
| Cow position: | chrX:31442832-31442669 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 242-467 |
| Cow position: | chrX:29601831-29601606 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 242-468 |
| Cow position: | chrX:27075054-27074827 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 139 |
| Conread position: | 242-472 |
| Cow position: | chrX:41027157-41027388 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 242-472 |
| Cow position: | chrX:42247184-42246953 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 243-441 |
| Cow position: | chrX:23514017-23513812 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 243-472 |
| Cow position: | chrX:42855457-42855691 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 243-473 |
| Cow position: | chrX:35985819-35986044 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 244-472 |
| Cow position: | chrX:22387246-22387015 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 138, 203 |
| Conread position: | 245-468 |
| Cow position: | chrX:26881565-26881338 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 7, 154 |
| Conread position: | 245-472 |
| Cow position: | chrX:40035441-40035214 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 153 |
| Conread position: | 246-378 |
| Cow position: | chrX:11073190-11073053 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 246-472 |
| Cow position: | chrX:36356113-36356332 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 251-468 |
| Cow position: | chrX:1122536-1122323 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 192, 129 |
| Conread position: | 252-472 |
| Cow position: | chrX:4559747-4559962 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 133, 40 |
| Conread position: | 256-472 |
| Cow position: | chrX:38094504-38094298 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 300-468 |
| Cow position: | chrX:23485581-23485754 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 300-473 |
| Cow position: | chrX:42875271-42875438 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 300-474 |
| Cow position: | chrX:42381052-42380882 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 301-472 |
| Cow position: | chrX:20583727-20583888 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 304-468 |
| Cow position: | chrX:8326968-8327129 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 137, 76 |
| Conread position: | 304-473 |
| Cow position: | chrX:41991070-41990894 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 306-472 |
| Cow position: | chrX:40648961-40649130 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.