Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 62-260 |
| Cow position: | chr10:12875775-12875575 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 63-506 |
| Cow position: | chr10:68204059-68203603 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 70-216 |
| Cow position: | chr10:15618727-15618581 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 70-337 |
| Cow position: | chr10:28566203-28565920 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 70-360 |
| Cow position: | chr10:1351977-1352283 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 122, 295 |
| Conread position: | 70-506 |
| Cow position: | chr10:3317906-3318362 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 306 |
| Conread position: | 70-506 |
| Cow position: | chr10:16669321-16668861 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 70-507 |
| Cow position: | chr10:11275695-11276155 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 80-506 |
| Cow position: | chr10:48193625-48193214 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 109, 68 |
| Conread position: | 83-265 |
| Cow position: | chr10:41637705-41637892 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 83-357 |
| Cow position: | chr10:22860102-22859811 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 107, 233 |
| Conread position: | 83-506 |
| Cow position: | chr10:22455247-22455674 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 354 |
| Conread position: | 84-336 |
| Cow position: | chr10:45650719-45650976 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 84-506 |
| Cow position: | chr10:38472255-38472678 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 247 |
| Conread position: | 87-265 |
| Cow position: | chr10:64074343-64074162 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 168 |
| Conread position: | 87-508 |
| Cow position: | chr10:43061054-43060611 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 106-426 |
| Cow position: | chr10:25257710-25258018 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 109-339 |
| Cow position: | chr10:67050774-67051012 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 165 |
| Conread position: | 109-374 |
| Cow position: | chr10:48208707-48208435 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 210 |
| Conread position: | 122-502 |
| Cow position: | chr10:68979641-68980004 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 73 |
| Conread position: | 126-361 |
| Cow position: | chr10:60243062-60243309 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 127-506 |
| Cow position: | chr10:37428584-37428204 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 198 |
| Conread position: | 128-542 |
| Cow position: | chr10:23880058-23879638 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 190 |
| Conread position: | 129-506 |
| Cow position: | chr10:767680-767310 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 129-506 |
| Cow position: | chr10:12199107-12199503 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 245 |
| Conread position: | 143-471 |
| Cow position: | chr10:27222882-27223220 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 161-461 |
| Cow position: | chr10:53375145-53374853 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 203-338 |
| Cow position: | chr10:63621837-63621703 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 203-433 |
| Cow position: | chr10:17923199-17923431 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 204-433 |
| Cow position: | chr10:881684-881916 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 175 |
| Conread position: | 208-433 |
| Cow position: | chr10:27132824-27132591 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 161 |
| Conread position: | 208-435 |
| Cow position: | chr10:57773587-57773806 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 208-515 |
| Cow position: | chr10:50141334-50141028 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 208-517 |
| Cow position: | chr10:47583883-47584180 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 210-430 |
| Cow position: | chr10:36303631-36303404 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 210-506 |
| Cow position: | chr10:17415698-17415410 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 213-433 |
| Cow position: | chr10:36425209-36424984 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 213-433 |
| Cow position: | chr10:58264685-58264461 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 215-517 |
| Cow position: | chr10:1328288-1327997 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 228-433 |
| Cow position: | chr10:7614590-7614782 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 228-433 |
| Cow position: | chr10:39245017-39244813 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 238-543 |
| Cow position: | chr10:15824315-15824006 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 257-542 |
| Cow position: | chr10:2711503-2711217 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 260-512 |
| Cow position: | chr10:3854978-3855212 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 268-505 |
| Cow position: | chr10:17745367-17745592 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 271-468 |
| Cow position: | chr10:19128553-19128357 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 272-408 |
| Cow position: | chr10:62629270-62629404 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 285-516 |
| Cow position: | chr10:15618173-15617953 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 286-506 |
| Cow position: | chr10:35181956-35182171 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 287-461 |
| Cow position: | chr10:9464464-9464635 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 303-542 |
| Cow position: | chr10:24609062-24609307 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 47, 75 |
| Conread position: | 312-506 |
| Cow position: | chr10:52131859-52132046 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 313-506 |
| Cow position: | chr10:41638081-41638274 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 314-507 |
| Cow position: | chr10:37092795-37092602 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 327-506 |
| Cow position: | chr10:5422076-5421896 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 327-517 |
| Cow position: | chr10:37665283-37665094 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 328-505 |
| Cow position: | chr10:67051199-67051371 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 342-506 |
| Cow position: | chr10:54342983-54342820 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 390-506 |
| Cow position: | chr10:60243983-60244098 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 45 |
Show alignments to all cow chromosomes.