Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 22-441 |
| Cow position: | chr11:21893471-21893057 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 62-546 |
| Cow position: | chr11:39831183-39830698 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 177 |
| Conread position: | 63-517 |
| Cow position: | chr11:57061917-57062362 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 69-301 |
| Cow position: | chr11:1774988-1774744 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 70-232 |
| Cow position: | chr11:24008130-24008292 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 70-353 |
| Cow position: | chr11:34024612-34024914 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 70-398 |
| Cow position: | chr11:9423961-9424300 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 70-483 |
| Cow position: | chr11:52859507-52859924 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 85, 204 |
| Conread position: | 70-506 |
| Cow position: | chr11:5221382-5220941 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 319 |
| Conread position: | 70-506 |
| Cow position: | chr11:12790852-12791256 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 70-506 |
| Cow position: | chr11:18154204-18153756 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 260 |
| Conread position: | 70-506 |
| Cow position: | chr11:55119533-55119959 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 70-515 |
| Cow position: | chr11:43831745-43831298 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 70-542 |
| Cow position: | chr11:25972863-25972416 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 165 |
| Conread position: | 71-499 |
| Cow position: | chr11:35251942-35251507 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 71-506 |
| Cow position: | chr11:77772635-77772206 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 5 |
| Conread position: | 71-543 |
| Cow position: | chr11:10877301-10877783 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 72-506 |
| Cow position: | chr11:25807691-25807245 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 73 |
| Conread position: | 76-506 |
| Cow position: | chr11:77756707-77756265 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 206 |
| Conread position: | 81-229 |
| Cow position: | chr11:23738727-23738577 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 136 |
| Conread position: | 83-506 |
| Cow position: | chr11:69491481-69491905 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 86-407 |
| Cow position: | chr11:51177547-51177870 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 87-517 |
| Cow position: | chr11:82528938-82529367 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 169 |
| Conread position: | 93-517 |
| Cow position: | chr11:34761645-34761225 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 170 |
| Conread position: | 99-371 |
| Cow position: | chr11:34265484-34265759 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 106-506 |
| Cow position: | chr11:57153580-57153168 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 226 |
| Conread position: | 109-505 |
| Cow position: | chr11:22851122-22851532 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 173 |
| Conread position: | 110-504 |
| Cow position: | chr11:57753302-57752889 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 110-515 |
| Cow position: | chr11:34303550-34303968 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 279 |
| Conread position: | 125-250 |
| Cow position: | chr11:74171598-74171470 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 125-506 |
| Cow position: | chr11:77820165-77819793 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 133-517 |
| Cow position: | chr11:40574664-40574272 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 168 |
| Conread position: | 183-493 |
| Cow position: | chr11:25856367-25856669 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 185-515 |
| Cow position: | chr11:34397645-34397982 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 7, 188 |
| Conread position: | 192-496 |
| Cow position: | chr11:18452969-18452669 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 203-502 |
| Cow position: | chr11:11109914-11109615 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 208-508 |
| Cow position: | chr11:21544244-21544530 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 210-433 |
| Cow position: | chr11:29014279-29014506 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 210-508 |
| Cow position: | chr11:58793804-58793513 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 210-517 |
| Cow position: | chr11:24008294-24008602 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 86 |
| Conread position: | 210-542 |
| Cow position: | chr11:8087959-8087632 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 224-506 |
| Cow position: | chr11:80269630-80269361 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 253-447 |
| Cow position: | chr11:64501803-64501997 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 256-507 |
| Cow position: | chr11:84729183-84729430 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 261-437 |
| Cow position: | chr11:80002976-80003153 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 261-509 |
| Cow position: | chr11:29785348-29785609 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 9, 131 |
| Conread position: | 263-504 |
| Cow position: | chr11:15885547-15885787 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 263-504 |
| Cow position: | chr11:74171360-74171125 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 275-438 |
| Cow position: | chr11:58579871-58580034 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 275-488 |
| Cow position: | chr11:12064971-12065181 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 290-515 |
| Cow position: | chr11:1774617-1774383 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 92 |
| Conread position: | 298-506 |
| Cow position: | chr11:70605664-70605870 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 299-506 |
| Cow position: | chr11:77713370-77713169 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 308-506 |
| Cow position: | chr11:44064176-44064377 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 126, 69 |
| Conread position: | 319-506 |
| Cow position: | chr11:21909843-21909642 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 328-506 |
| Cow position: | chr11:19567355-19567530 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 328-517 |
| Cow position: | chr11:35284417-35284596 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 331-517 |
| Cow position: | chr11:55283211-55283016 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 355-542 |
| Cow position: | chr11:54204481-54204297 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 153, 16 |
Show alignments to all cow chromosomes.