Cow genome map
Conread name: | rlin03_l3.y1 |
Conread position: | 63-375 |
Cow position: | chr13:37497804-37498112 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 64 |
Conread position: | 63-505 |
Cow position: | chr13:34885037-34885495 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 34 |
Conread position: | 69-506 |
Cow position: | chr13:38535304-38534882 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 197, 53 |
Conread position: | 70-215 |
Cow position: | chr13:46349584-46349732 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 111 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 70-216 |
Cow position: | chr13:1367933-1367783 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 112 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 70-216 |
Cow position: | chr13:43384712-43384862 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 112 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 70-471 |
Cow position: | chr13:39487408-39487813 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 51 |
Conread position: | 70-488 |
Cow position: | chr13:55406742-55407165 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 99 |
Conread position: | 70-499 |
Cow position: | chr13:34931369-34931762 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 37 |
Conread position: | 70-506 |
Cow position: | chr13:12325187-12325602 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 193 |
Conread position: | 70-506 |
Cow position: | chr13:38362199-38361780 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 299 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 117, 52 |
Conread position: | 72-506 |
Cow position: | chr13:19115504-19115926 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 31 |
Conread position: | 75-506 |
Cow position: | chr13:46464735-46464308 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 25 |
Conread position: | 80-542 |
Cow position: | chr13:45497344-45497815 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 335 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 106, 185 |
Conread position: | 81-519 |
Cow position: | chr13:34336353-34336769 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 57 |
Conread position: | 90-309 |
Cow position: | chr13:11441448-11441672 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 165 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 17, 175 |
Conread position: | 111-542 |
Cow position: | chr13:34264980-34264554 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 233 |
Conread position: | 117-516 |
Cow position: | chr13:51240852-51241251 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 154 |
Conread position: | 122-506 |
Cow position: | chr13:47325775-47325382 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 280 |
Conread position: | 124-323 |
Cow position: | chr13:59997899-59997688 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 158 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 63, 108 |
Conread position: | 124-350 |
Cow position: | chr13:9103773-9103547 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 167 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 60, 130 |
Conread position: | 124-375 |
Cow position: | chr13:62271996-62271742 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 191 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 62, 206 |
Conread position: | 125-488 |
Cow position: | chr13:24675801-24676162 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 62 |
Conread position: | 134-542 |
Cow position: | chr13:25955478-25955067 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 86 |
Conread position: | 136-358 |
Cow position: | chr13:30833978-30834196 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 173 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 52, 86 |
Conread position: | 145-506 |
Cow position: | chr13:17169350-17169706 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 122 |
Conread position: | 166-503 |
Cow position: | chr13:44144242-44143895 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 247 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 22, 143 |
Conread position: | 168-375 |
Cow position: | chr13:18839096-18839313 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 156 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 18, 134 |
Conread position: | 177-460 |
Cow position: | chr13:26942985-26943280 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 218 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 79, 8 |
Conread position: | 178-499 |
Cow position: | chr13:24404186-24403861 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 156 |
Conread position: | 207-433 |
Cow position: | chr13:21826381-21826593 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 165 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 207-447 |
Cow position: | chr13:43848879-43848642 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 173 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 57, 39 |
Conread position: | 207-506 |
Cow position: | chr13:43803135-43803448 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 213 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 9, 52 |
Conread position: | 207-530 |
Cow position: | chr13:20656543-20656876 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 239 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 61, 171 |
Conread position: | 208-438 |
Cow position: | chr13:17127538-17127306 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 157 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 57, 178 |
Conread position: | 208-441 |
Cow position: | chr13:46131798-46131567 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 163 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 58, 33 |
Conread position: | 208-505 |
Cow position: | chr13:28605624-28605932 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 184 |
Conread position: | 208-506 |
Cow position: | chr13:7804067-7803761 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 211 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 56, 49 |
Conread position: | 208-509 |
Cow position: | chr13:33239730-33240036 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 164 |
Conread position: | 208-537 |
Cow position: | chr13:15731349-15731029 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 218 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 70, 170 |
Conread position: | 209-508 |
Cow position: | chr13:26255508-26255208 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 208 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 98, 35 |
Conread position: | 210-522 |
Cow position: | chr13:21878461-21878148 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 49 |
Conread position: | 243-504 |
Cow position: | chr13:51142759-51142503 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 201 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 22, 130 |
Conread position: | 250-517 |
Cow position: | chr13:11223161-11222899 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 198 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 55, 117 |
Conread position: | 258-433 |
Cow position: | chr13:11570721-11570551 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 136 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 47, 10 |
Conread position: | 263-501 |
Cow position: | chr13:27844136-27843911 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 167 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 145, 91 |
Conread position: | 263-547 |
Cow position: | chr13:47280006-47279721 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 209 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 43, 5 |
Conread position: | 264-508 |
Cow position: | chr13:5619407-5619160 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 167 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 41, 16 |
Conread position: | 268-504 |
Cow position: | chr13:12213758-12213994 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 175 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 37, 44 |
Conread position: | 278-506 |
Cow position: | chr13:51435192-51434967 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 162 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 29, 57 |
Conread position: | 290-516 |
Cow position: | chr13:4796125-4796354 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 165 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 15, 92 |
Conread position: | 291-514 |
Cow position: | chr13:27726256-27726467 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 162 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 146, 49 |
Conread position: | 298-506 |
Cow position: | chr13:698697-698890 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 156 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 7, 53 |
Conread position: | 305-506 |
Cow position: | chr13:22193726-22193923 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 154 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 17, 55 |
Conread position: | 311-504 |
Cow position: | chr13:59997477-59997279 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 143 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 124, 63 |
Conread position: | 315-506 |
Cow position: | chr13:18597037-18596849 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 154 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 124, 61 |
Conread position: | 317-504 |
Cow position: | chr13:22984781-22984970 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 140 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 117, 12 |
Conread position: | 317-516 |
Cow position: | chr13:57611549-57611747 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 142 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 123, 60 |
Conread position: | 322-506 |
Cow position: | chr13:10854683-10854500 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 140 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 118, 53 |
Conread position: | 324-504 |
Cow position: | chr13:2416382-2416561 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 138 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 110, 58 |
Conread position: | 331-506 |
Cow position: | chr13:48580645-48580476 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 134 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 341-506 |
Cow position: | chr13:9103264-9103103 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 123 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 109, 41 |
Conread position: | 359-542 |
Cow position: | chr13:14708733-14708924 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 141 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 13, 39 |
Conread position: | 397-517 |
Cow position: | chr13:15489927-15490049 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 100 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.