Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 63-506 |
| Cow position: | chr15:53712566-53713013 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 211 |
| Conread position: | 65-507 |
| Cow position: | chr15:23265514-23265951 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 169 |
| Conread position: | 70-178 |
| Cow position: | chr15:5912691-5912583 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-230 |
| Cow position: | chr15:35041819-35041982 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 70-290 |
| Cow position: | chr15:40065671-40065907 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 70-410 |
| Cow position: | chr15:9072424-9072778 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 322 |
| Conread position: | 70-506 |
| Cow position: | chr15:17641940-17642374 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 165 |
| Conread position: | 70-506 |
| Cow position: | chr15:25683425-25683873 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 319 |
| Conread position: | 70-506 |
| Cow position: | chr15:37470229-37469784 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 70-506 |
| Cow position: | chr15:37633089-37633540 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 54 |
| Conread position: | 70-542 |
| Cow position: | chr15:44797549-44797052 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 330 |
| Conread position: | 71-326 |
| Cow position: | chr15:31918232-31917985 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 118, 51 |
| Conread position: | 73-506 |
| Cow position: | chr15:52868567-52868993 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 151 |
| Conread position: | 75-506 |
| Cow position: | chr15:11997476-11997932 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 80-506 |
| Cow position: | chr15:18403680-18404092 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 83-425 |
| Cow position: | chr15:37491947-37491609 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 142 |
| Conread position: | 84-506 |
| Cow position: | chr15:6523682-6523268 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 84-506 |
| Cow position: | chr15:53728526-53728103 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 106-303 |
| Cow position: | chr15:4721307-4721503 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 40, 132 |
| Conread position: | 108-471 |
| Cow position: | chr15:27972005-27971638 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 217 |
| Conread position: | 109-343 |
| Cow position: | chr15:50243089-50243327 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 110-506 |
| Cow position: | chr15:30569931-30570316 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 112 |
| Conread position: | 166-312 |
| Cow position: | chr15:1992622-1992775 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 198-443 |
| Cow position: | chr15:35052317-35052078 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 203-506 |
| Cow position: | chr15:578926-579223 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 208-433 |
| Cow position: | chr15:31882918-31883138 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 208-433 |
| Cow position: | chr15:43233222-43232992 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 208-472 |
| Cow position: | chr15:26365298-26365556 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 208-508 |
| Cow position: | chr15:1887952-1888249 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 209-509 |
| Cow position: | chr15:2436995-2437280 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 210-336 |
| Cow position: | chr15:5912572-5912442 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-485 |
| Cow position: | chr15:38902576-38902309 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 210-506 |
| Cow position: | chr15:12048858-12048566 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 210-506 |
| Cow position: | chr15:16669551-16669248 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 210-542 |
| Cow position: | chr15:49271828-49272145 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 212-506 |
| Cow position: | chr15:10581296-10581584 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 213-516 |
| Cow position: | chr15:31855352-31855651 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 214-472 |
| Cow position: | chr15:41344177-41343924 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 214-486 |
| Cow position: | chr15:14811047-14810769 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 214-517 |
| Cow position: | chr15:19813610-19813314 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 217-511 |
| Cow position: | chr15:36864666-36864376 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 225-433 |
| Cow position: | chr15:1233766-1233552 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 225-433 |
| Cow position: | chr15:1241116-1240902 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 225-499 |
| Cow position: | chr15:35042276-35042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 252-432 |
| Cow position: | chr15:3593520-3593340 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 263-483 |
| Cow position: | chr15:26866789-26866989 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 278-504 |
| Cow position: | chr15:12283120-12283338 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 173, 99 |
| Conread position: | 281-505 |
| Cow position: | chr15:16972189-16971973 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 281-506 |
| Cow position: | chr15:52131791-52132015 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 284-506 |
| Cow position: | chr15:21802504-21802715 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 287-499 |
| Cow position: | chr15:8630296-8630508 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 289-500 |
| Cow position: | chr15:9437459-9437667 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 309-507 |
| Cow position: | chr15:39809484-39809682 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 312-497 |
| Cow position: | chr15:36582575-36582393 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 317-517 |
| Cow position: | chr15:9428039-9427837 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 326-542 |
| Cow position: | chr15:11287394-11287171 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 328-504 |
| Cow position: | chr15:5912390-5912211 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 345-516 |
| Cow position: | chr15:40065906-40066073 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 349-542 |
| Cow position: | chr15:53335368-53335567 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 33 |
Show alignments to all cow chromosomes.