Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 67-214 |
| Cow position: | chr16:2375948-2375799 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 70-314 |
| Cow position: | chr16:4856418-4856167 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 70-375 |
| Cow position: | chr16:14443980-14444286 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 213 |
| Conread position: | 70-375 |
| Cow position: | chr16:29204971-29204677 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 189, 94 |
| Conread position: | 70-506 |
| Cow position: | chr16:4295456-4295023 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 70-506 |
| Cow position: | chr16:41680699-41680256 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 115 |
| Conread position: | 70-506 |
| Cow position: | chr16:43850760-43850323 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 70-508 |
| Cow position: | chr16:16118525-16118967 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 100 |
| Conread position: | 70-510 |
| Cow position: | chr16:23035229-23034787 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 35 |
| Conread position: | 70-515 |
| Cow position: | chr16:15508998-15509447 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 148 |
| Conread position: | 70-517 |
| Cow position: | chr16:12243491-12243036 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 71-322 |
| Cow position: | chr16:36910974-36910710 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 115, 210 |
| Conread position: | 71-406 |
| Cow position: | chr16:53516560-53516224 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 71-432 |
| Cow position: | chr16:11161483-11161819 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 72-251 |
| Cow position: | chr16:45551904-45552080 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 72-374 |
| Cow position: | chr16:17867411-17867110 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 53 |
| Conread position: | 72-506 |
| Cow position: | chr16:14799671-14799231 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 74-334 |
| Cow position: | chr16:19152777-19153047 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 48 |
| Conread position: | 76-294 |
| Cow position: | chr16:15734647-15734869 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 76-506 |
| Cow position: | chr16:22785968-22785539 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 284 |
| Conread position: | 76-506 |
| Cow position: | chr16:47781370-47781807 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 191 |
| Conread position: | 80-506 |
| Cow position: | chr16:13043900-13044352 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 397 |
| Conread position: | 82-216 |
| Cow position: | chr16:23747520-23747384 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 88-446 |
| Cow position: | chr16:47391127-47391479 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 115-305 |
| Cow position: | chr16:37442015-37441821 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 115-320 |
| Cow position: | chr16:2732026-2731820 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 116-383 |
| Cow position: | chr16:5131641-5131362 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 128-506 |
| Cow position: | chr16:30572499-30572119 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 138-454 |
| Cow position: | chr16:42405995-42406320 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 164-339 |
| Cow position: | chr16:6031479-6031300 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 181-506 |
| Cow position: | chr16:48894640-48894320 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 203-515 |
| Cow position: | chr16:23301547-23301849 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 242, 73 |
| Conread position: | 205-442 |
| Cow position: | chr16:11597686-11597443 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 207-447 |
| Cow position: | chr16:55910168-55909924 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 209-433 |
| Cow position: | chr16:16608022-16608244 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 209-441 |
| Cow position: | chr16:17003647-17003875 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 210-506 |
| Cow position: | chr16:45057615-45057918 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 213-438 |
| Cow position: | chr16:45698703-45698480 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 226-505 |
| Cow position: | chr16:9703387-9703104 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 251-506 |
| Cow position: | chr16:2371548-2371301 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 259-506 |
| Cow position: | chr16:23878604-23878857 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 260-503 |
| Cow position: | chr16:52650259-52650017 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 263-478 |
| Cow position: | chr16:43741837-43741634 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 5 |
| Conread position: | 290-506 |
| Cow position: | chr16:56373587-56373377 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 93 |
| Conread position: | 290-517 |
| Cow position: | chr16:43850216-43850006 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 297-493 |
| Cow position: | chr16:48604491-48604305 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 305-506 |
| Cow position: | chr16:30109523-30109320 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 30 |
| Conread position: | 309-516 |
| Cow position: | chr16:37508394-37508598 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 313-516 |
| Cow position: | chr16:2722734-2722530 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 315-484 |
| Cow position: | chr16:608569-608402 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 61 |
| Conread position: | 315-501 |
| Cow position: | chr16:14423217-14423404 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 357-506 |
| Cow position: | chr16:14084794-14084645 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 357-506 |
| Cow position: | chr16:32352474-32352621 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 373-517 |
| Cow position: | chr16:29204517-29204374 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 120 |
| Conread position: | 375-517 |
| Cow position: | chr16:31374535-31374392 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 399-516 |
| Cow position: | chr16:52813521-52813411 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.