Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 61-506 |
| Cow position: | chr17:1310155-1309714 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 62-269 |
| Cow position: | chr17:30329775-30329986 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 69-218 |
| Cow position: | chr17:36149213-36149366 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 70-375 |
| Cow position: | chr17:24608929-24609248 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 70-459 |
| Cow position: | chr17:25117077-25117472 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 70-506 |
| Cow position: | chr17:701514-701942 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 70-506 |
| Cow position: | chr17:28847551-28847101 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 71-290 |
| Cow position: | chr17:17501790-17501564 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 71-329 |
| Cow position: | chr17:13236589-13236325 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 73-484 |
| Cow position: | chr17:30358398-30358014 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 81-427 |
| Cow position: | chr17:20208706-20208343 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 86 |
| Conread position: | 84-252 |
| Cow position: | chr17:403737-403907 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 85-214 |
| Cow position: | chr17:7210473-7210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 109-506 |
| Cow position: | chr17:32451524-32451109 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 243 |
| Conread position: | 139-517 |
| Cow position: | chr17:2735879-2736272 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 171 |
| Conread position: | 184-506 |
| Cow position: | chr17:19789638-19789334 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 189-309 |
| Cow position: | chr17:30180488-30180610 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 194-402 |
| Cow position: | chr17:67783-67575 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 199-309 |
| Cow position: | chr17:30180854-30180966 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 199-309 |
| Cow position: | chr17:30181210-30181322 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 210-486 |
| Cow position: | chr17:18417993-18417714 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 210-506 |
| Cow position: | chr17:6980500-6980191 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 105 |
| Conread position: | 213-512 |
| Cow position: | chr17:27622658-27622361 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 214-506 |
| Cow position: | chr17:12842511-12842814 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 217-506 |
| Cow position: | chr17:13703564-13703840 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 225-506 |
| Cow position: | chr17:7210888-7211158 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 237-436 |
| Cow position: | chr17:7683881-7684078 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 270-506 |
| Cow position: | chr17:3849041-3849275 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 276-545 |
| Cow position: | chr17:27623659-27623396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 291-517 |
| Cow position: | chr17:11225517-11225739 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 321-542 |
| Cow position: | chr17:33271414-33271196 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 323-506 |
| Cow position: | chr17:3223724-3223897 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 330-506 |
| Cow position: | chr17:15450868-15451045 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 52 |
| Conread position: | 357-504 |
| Cow position: | chr17:404254-404401 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 392-506 |
| Cow position: | chr17:26481252-26481369 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.