Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 26-339 |
| Cow position: | chr18:39468860-39468560 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 204, 33 |
| Conread position: | 26-542 |
| Cow position: | chr18:39475265-39474754 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 33 |
| Conread position: | 70-296 |
| Cow position: | chr18:8204566-8204796 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 70-330 |
| Cow position: | chr18:8170216-8170487 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 116, 18 |
| Conread position: | 70-506 |
| Cow position: | chr18:29224731-29225152 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 99 |
| Conread position: | 72-221 |
| Cow position: | chr18:21290971-21290815 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 73-248 |
| Cow position: | chr18:31393629-31393805 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 105 |
| Conread position: | 80-341 |
| Cow position: | chr18:48550035-48550298 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 80-517 |
| Cow position: | chr18:28085618-28086061 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 238 |
| Conread position: | 87-444 |
| Cow position: | chr18:35471749-35471393 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 195 |
| Conread position: | 106-375 |
| Cow position: | chr18:14480496-14480778 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 108-506 |
| Cow position: | chr18:1700667-1701056 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 119 |
| Conread position: | 109-542 |
| Cow position: | chr18:32860728-32861163 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 124-356 |
| Cow position: | chr18:23504511-23504265 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 147 |
| Conread position: | 124-506 |
| Cow position: | chr18:22433698-22433307 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 93 |
| Conread position: | 124-515 |
| Cow position: | chr18:53028793-53029188 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 220 |
| Conread position: | 126-520 |
| Cow position: | chr18:22065269-22064878 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 134-505 |
| Cow position: | chr18:23316671-23316300 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 135 |
| Conread position: | 147-499 |
| Cow position: | chr18:25846910-25846567 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 167-506 |
| Cow position: | chr18:16259394-16259739 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 208-421 |
| Cow position: | chr18:37493232-37493445 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 60, 170 |
| Conread position: | 208-429 |
| Cow position: | chr18:33896014-33896238 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 208-442 |
| Cow position: | chr18:17228083-17227846 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 171 |
| Conread position: | 208-542 |
| Cow position: | chr18:5060377-5060022 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 227 |
| Conread position: | 209-432 |
| Cow position: | chr18:54166228-54166000 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 209-433 |
| Cow position: | chr18:39740138-39740369 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 210-542 |
| Cow position: | chr18:50880661-50880997 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 211-410 |
| Cow position: | chr18:21290593-21290394 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 214-371 |
| Cow position: | chr18:26667334-26667482 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 227-435 |
| Cow position: | chr18:16539107-16539316 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 249-506 |
| Cow position: | chr18:19152600-19152845 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 259-518 |
| Cow position: | chr18:53047827-53047569 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 260-517 |
| Cow position: | chr18:24664210-24663963 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 272-509 |
| Cow position: | chr18:29081256-29081488 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 319-506 |
| Cow position: | chr18:21123234-21123048 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 91, 111 |
| Conread position: | 319-542 |
| Cow position: | chr18:50242347-50242570 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 341-517 |
| Cow position: | chr18:49436661-49436834 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 387-509 |
| Cow position: | chr18:52870964-52871085 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 390-506 |
| Cow position: | chr18:36456395-36456512 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 66 |
Show alignments to all cow chromosomes.