Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 62-494 |
| Cow position: | chr2:7211854-7212292 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 63-301 |
| Cow position: | chr2:76055495-76055248 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 123, 187 |
| Conread position: | 64-515 |
| Cow position: | chr2:41490710-41491162 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 70-210 |
| Cow position: | chr2:66435354-66435492 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 116, 86 |
| Conread position: | 70-216 |
| Cow position: | chr2:6292700-6292849 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 70-216 |
| Cow position: | chr2:50017512-50017368 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 70-368 |
| Cow position: | chr2:18249814-18249508 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 70-373 |
| Cow position: | chr2:64073619-64073935 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 70-433 |
| Cow position: | chr2:62674169-62673819 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 123 |
| Conread position: | 70-465 |
| Cow position: | chr2:71121096-71121483 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 120, 16 |
| Conread position: | 70-502 |
| Cow position: | chr2:72598874-72599320 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 226 |
| Conread position: | 70-506 |
| Cow position: | chr2:31420076-31420503 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 70-506 |
| Cow position: | chr2:32393483-32393903 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 70-547 |
| Cow position: | chr2:77968432-77967960 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 94 |
| Conread position: | 71-338 |
| Cow position: | chr2:33825863-33825598 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 189, 114 |
| Conread position: | 71-506 |
| Cow position: | chr2:43345221-43344778 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 311 |
| Conread position: | 72-502 |
| Cow position: | chr2:21697661-21697217 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 96 |
| Conread position: | 75-542 |
| Cow position: | chr2:74388048-74387580 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 80-346 |
| Cow position: | chr2:31490318-31490582 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 80-506 |
| Cow position: | chr2:63288072-63287647 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 197 |
| Conread position: | 80-517 |
| Cow position: | chr2:33791400-33790963 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 172 |
| Conread position: | 81-350 |
| Cow position: | chr2:3296265-3296546 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 145 |
| Conread position: | 83-506 |
| Cow position: | chr2:53716899-53716475 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 221 |
| Conread position: | 90-504 |
| Cow position: | chr2:3182412-3182009 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 34 |
| Conread position: | 117-504 |
| Cow position: | chr2:47746341-47746726 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 73, 217 |
| Conread position: | 125-506 |
| Cow position: | chr2:82828249-82827871 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 128-517 |
| Cow position: | chr2:14037585-14037200 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 143-355 |
| Cow position: | chr2:24884134-24884357 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 164-406 |
| Cow position: | chr2:37003460-37003707 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 219 |
| Conread position: | 195-374 |
| Cow position: | chr2:13048411-13048600 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 201-430 |
| Cow position: | chr2:4830615-4830384 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 203-431 |
| Cow position: | chr2:16123193-16122961 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 203-442 |
| Cow position: | chr2:3628276-3628031 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 188 |
| Conread position: | 207-433 |
| Cow position: | chr2:79075796-79075570 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 126 |
| Conread position: | 208-437 |
| Cow position: | chr2:11340945-11340716 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 208-504 |
| Cow position: | chr2:1287661-1287957 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 208-509 |
| Cow position: | chr2:74848056-74848374 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 209-468 |
| Cow position: | chr2:40680029-40680279 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 209-508 |
| Cow position: | chr2:9242922-9243210 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 209-514 |
| Cow position: | chr2:9043408-9043718 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 167 |
| Conread position: | 210-476 |
| Cow position: | chr2:42286283-42286019 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 115 |
| Conread position: | 210-503 |
| Cow position: | chr2:20281700-20282000 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 211-506 |
| Cow position: | chr2:7779264-7778979 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 213-437 |
| Cow position: | chr2:32406212-32405988 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 213-542 |
| Cow position: | chr2:4927851-4927529 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 225-506 |
| Cow position: | chr2:23062688-23062414 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 227-515 |
| Cow position: | chr2:56823108-56822814 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 231-486 |
| Cow position: | chr2:3544363-3544118 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 231-505 |
| Cow position: | chr2:57501466-57501737 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 251-506 |
| Cow position: | chr2:39411897-39412161 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 7, 209 |
| Conread position: | 260-459 |
| Cow position: | chr2:37955689-37955881 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 268-516 |
| Cow position: | chr2:80604059-80603811 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 268-517 |
| Cow position: | chr2:52347500-52347257 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 285-506 |
| Cow position: | chr2:18274376-18274156 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 287-517 |
| Cow position: | chr2:7365929-7365702 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 151, 76 |
| Conread position: | 288-542 |
| Cow position: | chr2:40370473-40370232 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 298-506 |
| Cow position: | chr2:62463693-62463484 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 299-491 |
| Cow position: | chr2:13684901-13685091 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 299-542 |
| Cow position: | chr2:52183256-52183495 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 301-506 |
| Cow position: | chr2:44983364-44983159 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 311-506 |
| Cow position: | chr2:46130617-46130423 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 317-492 |
| Cow position: | chr2:76055070-76054898 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 16 |
| Conread position: | 319-539 |
| Cow position: | chr2:5767721-5767508 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 322-506 |
| Cow position: | chr2:12777244-12777069 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 325-517 |
| Cow position: | chr2:38583594-38583401 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 52 |
| Conread position: | 330-517 |
| Cow position: | chr2:38806015-38805832 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 119, 32 |
| Conread position: | 332-542 |
| Cow position: | chr2:3730445-3730655 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 347-516 |
| Cow position: | chr2:9709814-9709979 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.