Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 57-264 |
| Cow position: | chr20:20350893-20350682 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 152 |
| Conread position: | 63-344 |
| Cow position: | chr20:23422296-23422006 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 5, 206 |
| Conread position: | 63-430 |
| Cow position: | chr20:25293700-25294084 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 275 |
| Conread position: | 70-214 |
| Cow position: | chr20:21403017-21403162 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 18 |
| Conread position: | 70-352 |
| Cow position: | chr20:16585519-16585229 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 122, 35 |
| Conread position: | 70-375 |
| Cow position: | chr20:17474672-17474351 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 70-440 |
| Cow position: | chr20:4851268-4851654 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 117, 256 |
| Conread position: | 70-484 |
| Cow position: | chr20:27977597-27977174 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 184 |
| Conread position: | 70-506 |
| Cow position: | chr20:15147873-15147443 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 70-506 |
| Cow position: | chr20:22920055-22919603 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 70-506 |
| Cow position: | chr20:24280083-24280512 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 70-506 |
| Cow position: | chr20:35249477-35249034 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 70-517 |
| Cow position: | chr20:14864758-14864308 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 81-504 |
| Cow position: | chr20:13589040-13588601 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 191 |
| Conread position: | 84-506 |
| Cow position: | chr20:31563847-31563425 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 110-465 |
| Cow position: | chr20:36707305-36706948 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 122-359 |
| Cow position: | chr20:12119452-12119201 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 123-408 |
| Cow position: | chr20:25991924-25991620 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 238 |
| Conread position: | 146-506 |
| Cow position: | chr20:10722523-10722866 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 148-406 |
| Cow position: | chr20:26992960-26993226 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 238 |
| Conread position: | 164-503 |
| Cow position: | chr20:27844218-27844578 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 102 |
| Conread position: | 201-433 |
| Cow position: | chr20:22695075-22694847 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 207-517 |
| Cow position: | chr20:13790245-13790559 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 212 |
| Conread position: | 208-496 |
| Cow position: | chr20:22420541-22420258 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 210-438 |
| Cow position: | chr20:16788371-16788605 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 225-506 |
| Cow position: | chr20:9918735-9919025 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 170 |
| Conread position: | 226-506 |
| Cow position: | chr20:21002272-21001990 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 237-506 |
| Cow position: | chr20:5668506-5668226 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 155 |
| Conread position: | 263-506 |
| Cow position: | chr20:3377001-3376754 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 268-523 |
| Cow position: | chr20:21847586-21847335 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 285-504 |
| Cow position: | chr20:31098043-31098261 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 286-515 |
| Cow position: | chr20:20350454-20350232 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 287-517 |
| Cow position: | chr20:21415329-21415113 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 293-506 |
| Cow position: | chr20:23422020-23421807 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 306-479 |
| Cow position: | chr20:28617750-28617583 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 312-504 |
| Cow position: | chr20:30285726-30285915 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 321-517 |
| Cow position: | chr20:887285-887490 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 332-506 |
| Cow position: | chr20:7284237-7284409 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 340-506 |
| Cow position: | chr20:23400672-23400836 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 95, 37 |
| Conread position: | 387-506 |
| Cow position: | chr20:20072116-20071993 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.