Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 62-415 |
| Cow position: | chr3:55460462-55460108 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 62-506 |
| Cow position: | chr3:56042686-56042247 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 65-504 |
| Cow position: | chr3:23478267-23478707 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 197 |
| Conread position: | 70-215 |
| Cow position: | chr3:25062206-25062061 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-215 |
| Cow position: | chr3:42489256-42489108 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 70-215 |
| Cow position: | chr3:45735184-45735330 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 70-230 |
| Cow position: | chr3:74849005-74848842 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 70-247 |
| Cow position: | chr3:24356794-24356971 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 70-475 |
| Cow position: | chr3:77157374-77157759 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 70-516 |
| Cow position: | chr3:27633969-27633517 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 204 |
| Conread position: | 70-516 |
| Cow position: | chr3:84153363-84153794 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 299 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 198, 51 |
| Conread position: | 70-517 |
| Cow position: | chr3:24531868-24532309 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 72-471 |
| Cow position: | chr3:80928895-80928480 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 118, 87 |
| Conread position: | 72-515 |
| Cow position: | chr3:77467995-77468446 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 117 |
| Conread position: | 72-518 |
| Cow position: | chr3:1549326-1549804 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 75-504 |
| Cow position: | chr3:60854800-60854364 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 75-506 |
| Cow position: | chr3:32773252-32773675 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 184 |
| Conread position: | 76-390 |
| Cow position: | chr3:36538887-36538558 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 76 |
| Conread position: | 80-373 |
| Cow position: | chr3:31287054-31286778 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 184, 107 |
| Conread position: | 81-217 |
| Cow position: | chr3:19689589-19689454 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 84-249 |
| Cow position: | chr3:3690669-3690497 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 84-375 |
| Cow position: | chr3:56711591-56711283 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 86-468 |
| Cow position: | chr3:16115638-16115990 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 100, 176 |
| Conread position: | 106-547 |
| Cow position: | chr3:75281475-75281031 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 109-231 |
| Cow position: | chr3:27347247-27347123 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 109-506 |
| Cow position: | chr3:8753534-8753934 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 109-506 |
| Cow position: | chr3:21332723-21332334 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 78 |
| Conread position: | 124-504 |
| Cow position: | chr3:26581973-26581594 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 133-506 |
| Cow position: | chr3:85085963-85086326 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 54, 168 |
| Conread position: | 141-444 |
| Cow position: | chr3:8275553-8275863 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 164-360 |
| Cow position: | chr3:56161159-56161347 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 179-506 |
| Cow position: | chr3:43967273-43966936 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 205 |
| Conread position: | 191-506 |
| Cow position: | chr3:23274813-23274492 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 193-500 |
| Cow position: | chr3:17519635-17519318 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 196 |
| Conread position: | 200-506 |
| Cow position: | chr3:79315353-79315662 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 124 |
| Conread position: | 203-517 |
| Cow position: | chr3:35029240-35028915 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 103, 49 |
| Conread position: | 205-489 |
| Cow position: | chr3:50499761-50500034 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 208-506 |
| Cow position: | chr3:47497710-47497995 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 209-433 |
| Cow position: | chr3:33468603-33468376 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 180 |
| Conread position: | 209-434 |
| Cow position: | chr3:40269369-40269150 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 211-401 |
| Cow position: | chr3:27879792-27879606 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 213-517 |
| Cow position: | chr3:55107225-55106929 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 214-499 |
| Cow position: | chr3:65392244-65392543 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 215-438 |
| Cow position: | chr3:73826957-73827181 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 219-506 |
| Cow position: | chr3:60948001-60947718 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 221-506 |
| Cow position: | chr3:12311271-12311557 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 226-505 |
| Cow position: | chr3:74846531-74846253 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 229-442 |
| Cow position: | chr3:16622123-16621905 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 237-542 |
| Cow position: | chr3:9420030-9419719 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 244-516 |
| Cow position: | chr3:56163981-56164252 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 258-515 |
| Cow position: | chr3:45641737-45641979 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 263-433 |
| Cow position: | chr3:15329489-15329319 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 263-506 |
| Cow position: | chr3:3690456-3690221 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 268-506 |
| Cow position: | chr3:12531871-12531639 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 181, 37 |
| Conread position: | 273-517 |
| Cow position: | chr3:68127344-68127577 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 286-517 |
| Cow position: | chr3:27347103-27346871 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 288-506 |
| Cow position: | chr3:2284951-2285166 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 289-506 |
| Cow position: | chr3:78442626-78442407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 290-517 |
| Cow position: | chr3:22054358-22054148 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 299-506 |
| Cow position: | chr3:39385826-39385625 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 175, 61 |
| Conread position: | 303-504 |
| Cow position: | chr3:64081743-64081942 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 145, 74 |
| Conread position: | 307-506 |
| Cow position: | chr3:73418335-73418533 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 315-506 |
| Cow position: | chr3:13526919-13527102 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 328-506 |
| Cow position: | chr3:6798693-6798519 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 328-506 |
| Cow position: | chr3:73154259-73154430 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 332-506 |
| Cow position: | chr3:74724135-74723959 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 334-506 |
| Cow position: | chr3:43004497-43004323 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 336-506 |
| Cow position: | chr3:77589704-77589863 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 381-505 |
| Cow position: | chr3:27879575-27879450 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.