Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 57-339 |
| Cow position: | chr4:31586779-31586488 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 63-331 |
| Cow position: | chr4:8597639-8597360 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 63-506 |
| Cow position: | chr4:20925928-20925520 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 70-179 |
| Cow position: | chr4:49884939-49884830 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-241 |
| Cow position: | chr4:45114546-45114373 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 96 |
| Conread position: | 70-252 |
| Cow position: | chr4:57652301-57652484 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 172 |
| Conread position: | 70-352 |
| Cow position: | chr4:29222462-29222170 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 169 |
| Conread position: | 70-367 |
| Cow position: | chr4:17176210-17176506 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 142 |
| Conread position: | 70-372 |
| Cow position: | chr4:4300590-4300904 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 84 |
| Conread position: | 70-499 |
| Cow position: | chr4:53641382-53641802 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 234 |
| Conread position: | 70-504 |
| Cow position: | chr4:21162724-21163143 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 52 |
| Conread position: | 70-506 |
| Cow position: | chr4:5188951-5188513 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 119 |
| Conread position: | 70-506 |
| Cow position: | chr4:29067583-29067148 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 103 |
| Conread position: | 70-506 |
| Cow position: | chr4:41975655-41975226 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 184 |
| Conread position: | 70-534 |
| Cow position: | chr4:39646731-39647190 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 71-369 |
| Cow position: | chr4:27443894-27444205 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 71-506 |
| Cow position: | chr4:34043566-34043106 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 198 |
| Conread position: | 72-364 |
| Cow position: | chr4:58833155-58832856 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 119, 56 |
| Conread position: | 82-453 |
| Cow position: | chr4:59565606-59565996 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 199 |
| Conread position: | 82-500 |
| Cow position: | chr4:9822218-9822646 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 94-355 |
| Cow position: | chr4:9127784-9128047 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 97-322 |
| Cow position: | chr4:60159625-60159387 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 106-476 |
| Cow position: | chr4:46875428-46875030 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 133 |
| Conread position: | 108-324 |
| Cow position: | chr4:51905262-51905481 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 150 |
| Conread position: | 108-502 |
| Cow position: | chr4:57222128-57221725 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 240 |
| Conread position: | 109-452 |
| Cow position: | chr4:6793459-6793805 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 110-506 |
| Cow position: | chr4:47511123-47511525 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 164-299 |
| Cow position: | chr4:49884623-49884480 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 164-506 |
| Cow position: | chr4:57566060-57565723 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 190-441 |
| Cow position: | chr4:45113089-45112848 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 204-425 |
| Cow position: | chr4:12682804-12682590 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 208-403 |
| Cow position: | chr4:11175970-11176159 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 208-488 |
| Cow position: | chr4:2238032-2237760 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 208-505 |
| Cow position: | chr4:10722607-10722901 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 208-506 |
| Cow position: | chr4:58873455-58873740 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 208-506 |
| Cow position: | chr4:68107161-68106864 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 209-470 |
| Cow position: | chr4:13920209-13919958 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 210-489 |
| Cow position: | chr4:58856310-58856028 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 210-517 |
| Cow position: | chr4:58432763-58432459 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 211-506 |
| Cow position: | chr4:49741771-49742059 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 95 |
| Conread position: | 213-508 |
| Cow position: | chr4:47087198-47086917 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 45 |
| Conread position: | 230-542 |
| Cow position: | chr4:27505345-27505652 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 237-433 |
| Cow position: | chr4:13926428-13926238 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 240-504 |
| Cow position: | chr4:5783956-5784208 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 251-505 |
| Cow position: | chr4:7655015-7655262 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 111 |
| Conread position: | 252-508 |
| Cow position: | chr4:20311916-20312166 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 257-433 |
| Cow position: | chr4:9106289-9106459 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 258-502 |
| Cow position: | chr4:22507129-22506888 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 261-516 |
| Cow position: | chr4:36759523-36759789 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 267-496 |
| Cow position: | chr4:24713398-24713166 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 269-488 |
| Cow position: | chr4:27228724-27228951 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 278-506 |
| Cow position: | chr4:2443623-2443397 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 288-518 |
| Cow position: | chr4:15283465-15283687 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 291-506 |
| Cow position: | chr4:31003075-31002860 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 291-506 |
| Cow position: | chr4:57652493-57652706 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 306-506 |
| Cow position: | chr4:49881711-49881491 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 311-506 |
| Cow position: | chr4:51905573-51905769 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 312-542 |
| Cow position: | chr4:25924655-25924429 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 195, 65 |
| Conread position: | 315-506 |
| Cow position: | chr4:6630017-6629831 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 321-502 |
| Cow position: | chr4:62407473-62407646 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 321-506 |
| Cow position: | chr4:31586286-31586110 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 61 |
| Conread position: | 331-517 |
| Cow position: | chr4:5886662-5886841 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 333-516 |
| Cow position: | chr4:54347527-54347708 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 337-475 |
| Cow position: | chr4:1059352-1059216 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 40 |
Show alignments to all cow chromosomes.