Cow genome map
Conread name: | rlin03_l3.y1 |
Conread position: | 62-309 |
Cow position: | chr5:10786151-10785882 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 196 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 9, 27 |
Conread position: | 62-516 |
Cow position: | chr5:26562234-26562676 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 24 |
Conread position: | 67-504 |
Cow position: | chr5:29431559-29431140 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 88 |
Conread position: | 67-506 |
Cow position: | chr5:15882375-15881925 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 309 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 68, 321 |
Conread position: | 70-337 |
Cow position: | chr5:54156794-54157065 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 201 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 117, 52 |
Conread position: | 70-503 |
Cow position: | chr5:37048145-37048570 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 40 |
Conread position: | 70-506 |
Cow position: | chr5:27492790-27493263 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 348 |
Conread position: | 70-506 |
Cow position: | chr5:34483438-34483017 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 82 |
Conread position: | 70-506 |
Cow position: | chr5:60968503-60968966 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 327 |
Conread position: | 70-517 |
Cow position: | chr5:21146136-21145691 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 197, 52 |
Conread position: | 71-235 |
Cow position: | chr5:25927599-25927436 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 127 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 116, 50 |
Conread position: | 72-517 |
Cow position: | chr5:45912202-45911767 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 79 |
Conread position: | 73-212 |
Cow position: | chr5:23753124-23752981 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 109 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 113, 0 |
Conread position: | 73-506 |
Cow position: | chr5:57127538-57127978 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 317 |
Conread position: | 75-375 |
Cow position: | chr5:9233283-9232976 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 226 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 111, 188 |
Conread position: | 83-495 |
Cow position: | chr5:51076537-51076104 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 307 |
Conread position: | 84-541 |
Cow position: | chr5:23234576-23235031 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 324 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 102, 13 |
Conread position: | 85-331 |
Cow position: | chr5:21166950-21166693 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 188 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 101, 147 |
Conread position: | 86-344 |
Cow position: | chr5:31550726-31550983 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 193 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 101, 26 |
Conread position: | 96-322 |
Cow position: | chr5:62863952-62863736 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 173 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 8, 14 |
Conread position: | 106-506 |
Cow position: | chr5:56741790-56742181 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 89 |
Conread position: | 124-266 |
Cow position: | chr5:34168311-34168458 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 114 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 63, 142 |
Conread position: | 124-339 |
Cow position: | chr5:60725183-60725398 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 160 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 63, 139 |
Conread position: | 124-419 |
Cow position: | chr5:10455506-10455804 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 213 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 62, 17 |
Conread position: | 133-467 |
Cow position: | chr5:76122763-76122429 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 232 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 59, 33 |
Conread position: | 134-506 |
Cow position: | chr5:13575612-13575224 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 284 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 53, 12 |
Conread position: | 138-387 |
Cow position: | chr5:67577115-67577361 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 177 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 46, 164 |
Conread position: | 145-307 |
Cow position: | chr5:9025123-9025288 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 129 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 42, 89 |
Conread position: | 148-348 |
Cow position: | chr5:33564034-33564237 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 148 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 39, 103 |
Conread position: | 148-514 |
Cow position: | chr5:9585567-9585215 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 261 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 35, 81 |
Conread position: | 156-416 |
Cow position: | chr5:62579978-62580241 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 193 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 31, 202 |
Conread position: | 195-506 |
Cow position: | chr5:56109943-56109626 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 34 |
Conread position: | 201-453 |
Cow position: | chr5:53599832-53599577 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 197 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 12, 168 |
Conread position: | 201-506 |
Cow position: | chr5:51953093-51953404 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 24 |
Conread position: | 201-515 |
Cow position: | chr5:51360866-51361162 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 221 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 11, 57 |
Conread position: | 207-433 |
Cow position: | chr5:31784836-31785056 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 159 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 60, 107 |
Conread position: | 207-438 |
Cow position: | chr5:55985588-55985355 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 171 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 51, 90 |
Conread position: | 208-433 |
Cow position: | chr5:57733511-57733739 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 155 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 10, 170 |
Conread position: | 208-471 |
Cow position: | chr5:25925644-25925379 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 193 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 49, 36 |
Conread position: | 208-478 |
Cow position: | chr5:57965065-57964809 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 194 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 51, 111 |
Conread position: | 208-488 |
Cow position: | chr5:48224053-48223788 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 190 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 208-517 |
Cow position: | chr5:38274000-38274321 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 224 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 61, 17 |
Conread position: | 210-401 |
Cow position: | chr5:38911300-38911491 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 140 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 56, 169 |
Conread position: | 210-468 |
Cow position: | chr5:26161749-26161509 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 189 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 95, 43 |
Conread position: | 210-506 |
Cow position: | chr5:26098436-26098152 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 211 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 97, 47 |
Conread position: | 211-348 |
Cow position: | chr5:73051355-73051500 (view UCSC Genome Browser custom track) |
Alignm length: | 146 |
Alignm identity: | 111 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 213-437 |
Cow position: | chr5:50770411-50770187 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 159 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 53, 102 |
Conread position: | 213-517 |
Cow position: | chr5:35583867-35584162 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 212 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 23, 149 |
Conread position: | 218-507 |
Cow position: | chr5:72755296-72755577 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 198 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 219-517 |
Cow position: | chr5:11235821-11236117 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 210 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 86, 37 |
Conread position: | 222-429 |
Cow position: | chr5:6149783-6149573 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 149 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 43, 158 |
Conread position: | 227-504 |
Cow position: | chr5:14072324-14072058 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 200 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 30, 86 |
Conread position: | 260-506 |
Cow position: | chr5:67463499-67463740 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 181 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 152, 41 |
Conread position: | 260-516 |
Cow position: | chr5:35748823-35749071 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 193 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 11, 6 |
Conread position: | 263-506 |
Cow position: | chr5:12329408-12329164 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 187 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 43, 16 |
Conread position: | 265-506 |
Cow position: | chr5:71278942-71279183 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 184 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 172, 50 |
Conread position: | 268-433 |
Cow position: | chr5:37608542-37608708 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 124 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 98, 9 |
Conread position: | 268-506 |
Cow position: | chr5:27679531-27679295 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 182 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 166, 29 |
Conread position: | 273-445 |
Cow position: | chr5:54606166-54606332 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 130 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 32, 23 |
Conread position: | 276-542 |
Cow position: | chr5:28371098-28370848 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 183 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 30, 106 |
Conread position: | 286-502 |
Cow position: | chr5:25355312-25355530 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 168 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 19, 98 |
Conread position: | 312-517 |
Cow position: | chr5:9025512-9025717 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 167 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 130, 65 |
Conread position: | 316-508 |
Cow position: | chr5:39206955-39206763 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 148 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 105, 61 |
Conread position: | 317-504 |
Cow position: | chr5:15808580-15808393 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 147 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 118, 60 |
Conread position: | 319-517 |
Cow position: | chr5:12609953-12610138 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 143 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 322-506 |
Cow position: | chr5:19299132-19298952 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 134 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 60, 0 |
Conread position: | 328-506 |
Cow position: | chr5:20648909-20648735 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 139 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 122, 54 |
Conread position: | 328-517 |
Cow position: | chr5:47698039-47697853 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 141 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 106, 54 |
Conread position: | 331-506 |
Cow position: | chr5:1286715-1286893 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 132 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 106, 45 |
Conread position: | 336-497 |
Cow position: | chr5:29029698-29029866 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 124 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 61, 46 |
Conread position: | 343-506 |
Cow position: | chr5:56826408-56826570 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 124 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 97, 34 |
Show alignments to all cow chromosomes.