Cow genome map

Conread name: rlin03_l3.y1

Conread position: 62-309
Cow position: chr5:10786151-10785882 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 27

Conread position: 62-516
Cow position: chr5:26562234-26562676 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 24

Conread position: 67-504
Cow position: chr5:29431559-29431140 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 88

Conread position: 67-506
Cow position: chr5:15882375-15881925 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 68, 321

Conread position: 70-337
Cow position: chr5:54156794-54157065 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 117, 52

Conread position: 70-503
Cow position: chr5:37048145-37048570 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 40

Conread position: 70-506
Cow position: chr5:27492790-27493263 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 348

Conread position: 70-506
Cow position: chr5:34483438-34483017 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 82

Conread position: 70-506
Cow position: chr5:60968503-60968966 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 327

Conread position: 70-517
Cow position: chr5:21146136-21145691 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 52

Conread position: 71-235
Cow position: chr5:25927599-25927436 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 116, 50

Conread position: 72-517
Cow position: chr5:45912202-45911767 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 79

Conread position: 73-212
Cow position: chr5:23753124-23752981 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 73-506
Cow position: chr5:57127538-57127978 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 317

Conread position: 75-375
Cow position: chr5:9233283-9232976 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 188

Conread position: 83-495
Cow position: chr5:51076537-51076104 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 307

Conread position: 84-541
Cow position: chr5:23234576-23235031 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 102, 13

Conread position: 85-331
Cow position: chr5:21166950-21166693 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 101, 147

Conread position: 86-344
Cow position: chr5:31550726-31550983 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 26

Conread position: 96-322
Cow position: chr5:62863952-62863736 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 8, 14

Conread position: 106-506
Cow position: chr5:56741790-56742181 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 89

Conread position: 124-266
Cow position: chr5:34168311-34168458 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 142

Conread position: 124-339
Cow position: chr5:60725183-60725398 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 139

Conread position: 124-419
Cow position: chr5:10455506-10455804 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 62, 17

Conread position: 133-467
Cow position: chr5:76122763-76122429 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 59, 33

Conread position: 134-506
Cow position: chr5:13575612-13575224 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 53, 12

Conread position: 138-387
Cow position: chr5:67577115-67577361 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 164

Conread position: 145-307
Cow position: chr5:9025123-9025288 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 89

Conread position: 148-348
Cow position: chr5:33564034-33564237 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 103

Conread position: 148-514
Cow position: chr5:9585567-9585215 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 35, 81

Conread position: 156-416
Cow position: chr5:62579978-62580241 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 31, 202

Conread position: 195-506
Cow position: chr5:56109943-56109626 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 34

Conread position: 201-453
Cow position: chr5:53599832-53599577 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 168

Conread position: 201-506
Cow position: chr5:51953093-51953404 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 24

Conread position: 201-515
Cow position: chr5:51360866-51361162 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 11, 57

Conread position: 207-433
Cow position: chr5:31784836-31785056 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 107

Conread position: 207-438
Cow position: chr5:55985588-55985355 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 90

Conread position: 208-433
Cow position: chr5:57733511-57733739 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 10, 170

Conread position: 208-471
Cow position: chr5:25925644-25925379 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 36

Conread position: 208-478
Cow position: chr5:57965065-57964809 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 111

Conread position: 208-488
Cow position: chr5:48224053-48223788 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 208-517
Cow position: chr5:38274000-38274321 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 61, 17

Conread position: 210-401
Cow position: chr5:38911300-38911491 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 169

Conread position: 210-468
Cow position: chr5:26161749-26161509 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 95, 43

Conread position: 210-506
Cow position: chr5:26098436-26098152 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 97, 47

Conread position: 211-348
Cow position: chr5:73051355-73051500 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 213-437
Cow position: chr5:50770411-50770187 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 53, 102

Conread position: 213-517
Cow position: chr5:35583867-35584162 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 149

Conread position: 218-507
Cow position: chr5:72755296-72755577 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 219-517
Cow position: chr5:11235821-11236117 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 86, 37

Conread position: 222-429
Cow position: chr5:6149783-6149573 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 43, 158

Conread position: 227-504
Cow position: chr5:14072324-14072058 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 86

Conread position: 260-506
Cow position: chr5:67463499-67463740 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 41

Conread position: 260-516
Cow position: chr5:35748823-35749071 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 6

Conread position: 263-506
Cow position: chr5:12329408-12329164 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 43, 16

Conread position: 265-506
Cow position: chr5:71278942-71279183 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 172, 50

Conread position: 268-433
Cow position: chr5:37608542-37608708 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 9

Conread position: 268-506
Cow position: chr5:27679531-27679295 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 166, 29

Conread position: 273-445
Cow position: chr5:54606166-54606332 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 23

Conread position: 276-542
Cow position: chr5:28371098-28370848 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 106

Conread position: 286-502
Cow position: chr5:25355312-25355530 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 98

Conread position: 312-517
Cow position: chr5:9025512-9025717 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 130, 65

Conread position: 316-508
Cow position: chr5:39206955-39206763 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 105, 61

Conread position: 317-504
Cow position: chr5:15808580-15808393 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 118, 60

Conread position: 319-517
Cow position: chr5:12609953-12610138 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 322-506
Cow position: chr5:19299132-19298952 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 328-506
Cow position: chr5:20648909-20648735 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 122, 54

Conread position: 328-517
Cow position: chr5:47698039-47697853 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 54

Conread position: 331-506
Cow position: chr5:1286715-1286893 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 106, 45

Conread position: 336-497
Cow position: chr5:29029698-29029866 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 46

Conread position: 343-506
Cow position: chr5:56826408-56826570 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 34

Show alignments to all cow chromosomes.