Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 62-506 |
| Cow position: | chr6:23891657-23892096 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 203 |
| Conread position: | 62-506 |
| Cow position: | chr6:29077835-29078274 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 62-515 |
| Cow position: | chr6:23932863-23932444 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 63-350 |
| Cow position: | chr6:4666695-4666397 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 63-506 |
| Cow position: | chr6:45692559-45692124 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 158 |
| Conread position: | 65-288 |
| Cow position: | chr6:12519602-12519825 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 69-408 |
| Cow position: | chr6:6244799-6244472 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 124 |
| Conread position: | 69-499 |
| Cow position: | chr6:31688077-31687653 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 142 |
| Conread position: | 70-336 |
| Cow position: | chr6:40240645-40240900 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 70-346 |
| Cow position: | chr6:19459149-19459437 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 136, 73 |
| Conread position: | 70-453 |
| Cow position: | chr6:69274680-69274286 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 259 |
| Conread position: | 70-506 |
| Cow position: | chr6:6635252-6635688 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 51 |
| Conread position: | 70-506 |
| Cow position: | chr6:11159894-11159450 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 36 |
| Conread position: | 70-517 |
| Cow position: | chr6:44377379-44377826 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 39 |
| Conread position: | 70-517 |
| Cow position: | chr6:45617324-45616879 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 72-517 |
| Cow position: | chr6:41557579-41558036 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 94 |
| Conread position: | 80-503 |
| Cow position: | chr6:41157348-41157764 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 106 |
| Conread position: | 83-216 |
| Cow position: | chr6:51071830-51071965 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 101, 129 |
| Conread position: | 83-506 |
| Cow position: | chr6:39917286-39917713 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 85-542 |
| Cow position: | chr6:3017563-3018051 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 319 |
| Conread position: | 86-506 |
| Cow position: | chr6:58593991-58593599 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 218, 100 |
| Conread position: | 102-506 |
| Cow position: | chr6:5678904-5678492 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 82, 110 |
| Conread position: | 110-376 |
| Cow position: | chr6:29082912-29082651 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 127-504 |
| Cow position: | chr6:62754327-62753946 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 129-327 |
| Cow position: | chr6:39293057-39293260 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 138-503 |
| Cow position: | chr6:3374271-3373877 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 264 |
| Conread position: | 191-337 |
| Cow position: | chr6:40299190-40299037 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 196-506 |
| Cow position: | chr6:32428677-32428984 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 203-511 |
| Cow position: | chr6:1077177-1076866 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 208-441 |
| Cow position: | chr6:46627250-46627484 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 210-431 |
| Cow position: | chr6:12516085-12516304 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 210-506 |
| Cow position: | chr6:6722394-6722695 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 210-508 |
| Cow position: | chr6:66840113-66840417 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 55, 170 |
| Conread position: | 210-517 |
| Cow position: | chr6:53416708-53416401 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 213-431 |
| Cow position: | chr6:29299808-29300024 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 228-505 |
| Cow position: | chr6:20332576-20332858 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 19, 127 |
| Conread position: | 237-517 |
| Cow position: | chr6:28087238-28086955 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 244-502 |
| Cow position: | chr6:55662017-55662275 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 245-453 |
| Cow position: | chr6:66676995-66677216 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 132 |
| Conread position: | 252-506 |
| Cow position: | chr6:812116-811857 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 263-506 |
| Cow position: | chr6:35698116-35697874 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 268-506 |
| Cow position: | chr6:44389941-44389705 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 276-503 |
| Cow position: | chr6:22098348-22098129 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 278-506 |
| Cow position: | chr6:35831863-35832096 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 126 |
| Conread position: | 289-504 |
| Cow position: | chr6:14279984-14280201 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 304-506 |
| Cow position: | chr6:33311452-33311649 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 317-506 |
| Cow position: | chr6:39293531-39293711 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 320-499 |
| Cow position: | chr6:37085255-37085432 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 328-484 |
| Cow position: | chr6:40241054-40241210 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 328-508 |
| Cow position: | chr6:34556878-34557055 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 99, 54 |
| Conread position: | 335-536 |
| Cow position: | chr6:43596172-43595968 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 341-515 |
| Cow position: | chr6:35126725-35126559 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 357-506 |
| Cow position: | chr6:50501993-50502138 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 12 |
Show alignments to all cow chromosomes.