Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 31-506 |
| Cow position: | chr8:45686408-45685955 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 63-257 |
| Cow position: | chr8:8480871-8480674 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 130, 105 |
| Conread position: | 63-330 |
| Cow position: | chr8:21119204-21118928 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 63-506 |
| Cow position: | chr8:40432796-40432354 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 106 |
| Conread position: | 70-242 |
| Cow position: | chr8:59137823-59137651 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 70-307 |
| Cow position: | chr8:27369165-27369407 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 70-364 |
| Cow position: | chr8:32720051-32720316 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 168, 35 |
| Conread position: | 70-480 |
| Cow position: | chr8:51877860-51877467 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 200, 98 |
| Conread position: | 70-486 |
| Cow position: | chr8:48682417-48682001 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 85 |
| Conread position: | 70-499 |
| Cow position: | chr8:19369409-19368997 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 70-509 |
| Cow position: | chr8:54158810-54159257 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 254 |
| Conread position: | 70-516 |
| Cow position: | chr8:2974728-2975191 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 326 |
| Conread position: | 70-517 |
| Cow position: | chr8:7104340-7103892 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 70-517 |
| Cow position: | chr8:19772575-19772993 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 71-542 |
| Cow position: | chr8:33437871-33438349 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 75-366 |
| Cow position: | chr8:11792281-11792597 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 79-506 |
| Cow position: | chr8:22103118-22102675 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 80-375 |
| Cow position: | chr8:21078617-21078920 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 272 |
| Conread position: | 108-505 |
| Cow position: | chr8:4336956-4336546 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 283 |
| Conread position: | 110-506 |
| Cow position: | chr8:5874269-5874657 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 120-501 |
| Cow position: | chr8:40273515-40273132 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 126-451 |
| Cow position: | chr8:952164-952487 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 126-498 |
| Cow position: | chr8:30021793-30021414 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 237 |
| Conread position: | 126-506 |
| Cow position: | chr8:18725343-18725721 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 133-506 |
| Cow position: | chr8:20341571-20341185 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 189-410 |
| Cow position: | chr8:51443359-51443142 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 190-517 |
| Cow position: | chr8:54828434-54828765 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 198-506 |
| Cow position: | chr8:12790673-12790380 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 199-501 |
| Cow position: | chr8:18810631-18810941 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 163 |
| Conread position: | 208-432 |
| Cow position: | chr8:36608828-36608608 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 208-433 |
| Cow position: | chr8:41411445-41411674 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 208-447 |
| Cow position: | chr8:43399178-43398932 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 208-458 |
| Cow position: | chr8:20672223-20671978 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 208-508 |
| Cow position: | chr8:47128786-47129084 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 208-517 |
| Cow position: | chr8:42151776-42151482 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 209-443 |
| Cow position: | chr8:60055565-60055332 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 209-459 |
| Cow position: | chr8:36686888-36687141 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 210-373 |
| Cow position: | chr8:51562248-51562413 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 103 |
| Conread position: | 210-431 |
| Cow position: | chr8:21945644-21945868 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 210-453 |
| Cow position: | chr8:51633987-51633738 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 56, 179 |
| Conread position: | 210-505 |
| Cow position: | chr8:53891744-53892044 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 45, 157 |
| Conread position: | 212-517 |
| Cow position: | chr8:23440884-23440586 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 47, 115 |
| Conread position: | 213-506 |
| Cow position: | chr8:15870886-15870593 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 214-374 |
| Cow position: | chr8:11974680-11974841 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 214-482 |
| Cow position: | chr8:33819011-33818741 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 218-447 |
| Cow position: | chr8:20286812-20287045 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 219-374 |
| Cow position: | chr8:9985956-9986110 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 225-508 |
| Cow position: | chr8:14617668-14617381 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 40, 159 |
| Conread position: | 230-375 |
| Cow position: | chr8:31185251-31185395 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 239-516 |
| Cow position: | chr8:6508035-6507753 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 249-517 |
| Cow position: | chr8:34439724-34439984 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 260-507 |
| Cow position: | chr8:53359693-53359441 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 262-506 |
| Cow position: | chr8:18883094-18883340 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 268-506 |
| Cow position: | chr8:8480378-8480134 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 269-503 |
| Cow position: | chr8:6764002-6763771 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 272-506 |
| Cow position: | chr8:18801518-18801750 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 278-506 |
| Cow position: | chr8:28387487-28387265 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 306-508 |
| Cow position: | chr8:9672193-9672396 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 131, 77 |
| Conread position: | 319-517 |
| Cow position: | chr8:19793387-19793195 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 326-518 |
| Cow position: | chr8:1168112-1167918 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 27 |
| Conread position: | 377-534 |
| Cow position: | chr8:26041000-26040843 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 116 |
Show alignments to all cow chromosomes.