Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 55-254 |
| Cow position: | chr9:59114356-59114143 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 62-506 |
| Cow position: | chr9:6109859-6109429 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 63-328 |
| Cow position: | chr9:55364861-55364583 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 63-517 |
| Cow position: | chr9:4834957-4834499 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 92 |
| Conread position: | 70-216 |
| Cow position: | chr9:55650997-55650848 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 142 |
| Conread position: | 70-432 |
| Cow position: | chr9:1281139-1281514 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 223 |
| Conread position: | 70-506 |
| Cow position: | chr9:18570425-18570865 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 314 |
| Conread position: | 70-506 |
| Cow position: | chr9:25502571-25502983 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 120 |
| Conread position: | 70-506 |
| Cow position: | chr9:34762891-34763336 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 70-517 |
| Cow position: | chr9:4985421-4985855 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 71-547 |
| Cow position: | chr9:51269828-51269358 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 314 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 114, 278 |
| Conread position: | 75-215 |
| Cow position: | chr9:14732289-14732147 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 75-254 |
| Cow position: | chr9:10761389-10761568 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-328 |
| Cow position: | chr9:15685497-15685751 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 80-506 |
| Cow position: | chr9:12198945-12199389 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 88 |
| Conread position: | 81-415 |
| Cow position: | chr9:5622072-5622408 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 81-488 |
| Cow position: | chr9:9077155-9077568 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 85-374 |
| Cow position: | chr9:44944159-44944451 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 182 |
| Conread position: | 94-506 |
| Cow position: | chr9:41318030-41318466 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 305 |
| Conread position: | 97-375 |
| Cow position: | chr9:39993678-39993964 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 103-468 |
| Cow position: | chr9:52725420-52725796 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 289 |
| Conread position: | 115-504 |
| Cow position: | chr9:7670536-7670147 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 273 |
| Conread position: | 124-506 |
| Cow position: | chr9:34188873-34188505 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 125-506 |
| Cow position: | chr9:53596899-53597294 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 126-517 |
| Cow position: | chr9:2638410-2638809 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 211 |
| Conread position: | 164-504 |
| Cow position: | chr9:35527584-35527234 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 27, 214 |
| Conread position: | 189-517 |
| Cow position: | chr9:12565212-12564903 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 191-464 |
| Cow position: | chr9:46657817-46658084 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 201-453 |
| Cow position: | chr9:3582793-3583041 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 203-441 |
| Cow position: | chr9:24886469-24886705 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 207-441 |
| Cow position: | chr9:32688676-32688905 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 207-498 |
| Cow position: | chr9:12183550-12183251 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 208-459 |
| Cow position: | chr9:9539411-9539162 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 208-542 |
| Cow position: | chr9:47200398-47200728 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 210-337 |
| Cow position: | chr9:4915016-4915145 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 210-506 |
| Cow position: | chr9:1517485-1517765 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 210-515 |
| Cow position: | chr9:39001580-39001281 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 168 |
| Conread position: | 211-380 |
| Cow position: | chr9:19080409-19080582 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 212-484 |
| Cow position: | chr9:26197821-26198088 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 213-506 |
| Cow position: | chr9:1526983-1527279 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 215-402 |
| Cow position: | chr9:42214841-42215031 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 217-515 |
| Cow position: | chr9:31540107-31540399 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 221-517 |
| Cow position: | chr9:36508283-36508587 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 239-542 |
| Cow position: | chr9:55262464-55262754 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 268-432 |
| Cow position: | chr9:40858925-40859090 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 268-506 |
| Cow position: | chr9:6557577-6557344 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 268-506 |
| Cow position: | chr9:15855282-15855515 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 268-506 |
| Cow position: | chr9:50108838-50108605 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 278-506 |
| Cow position: | chr9:8234346-8234133 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 285-432 |
| Cow position: | chr9:7537814-7537958 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 287-504 |
| Cow position: | chr9:25812572-25812775 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 290-504 |
| Cow position: | chr9:56411392-56411596 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 298-514 |
| Cow position: | chr9:58125908-58125690 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 321-542 |
| Cow position: | chr9:19835682-19835907 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 322-515 |
| Cow position: | chr9:45140597-45140400 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 324-515 |
| Cow position: | chr9:22376964-22376771 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 110, 56 |
| Conread position: | 335-518 |
| Cow position: | chr9:23294324-23294153 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 357-511 |
| Cow position: | chr9:15282842-15282687 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 77, 20 |
Show alignments to all cow chromosomes.