Cow genome map
| Conread name: | rlin03_l3.y1 |
| Conread position: | 62-503 |
| Cow position: | chrX:18814260-18814700 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 67-491 |
| Cow position: | chrX:23254111-23253695 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 70-252 |
| Cow position: | chrX:4631575-4631385 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 141, 119 |
| Conread position: | 70-325 |
| Cow position: | chrX:24286054-24286318 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 70-467 |
| Cow position: | chrX:8558367-8557973 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 316 |
| Conread position: | 70-473 |
| Cow position: | chrX:24201279-24201679 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 70-493 |
| Cow position: | chrX:4597633-4597190 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 70-506 |
| Cow position: | chrX:956578-957023 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 70-506 |
| Cow position: | chrX:2186357-2186790 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 244 |
| Conread position: | 70-506 |
| Cow position: | chrX:11675162-11675606 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 251 |
| Conread position: | 70-506 |
| Cow position: | chrX:43647666-43647219 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 70-542 |
| Cow position: | chrX:19018162-19017661 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 72-208 |
| Cow position: | chrX:12826849-12826984 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 73-359 |
| Cow position: | chrX:16816769-16817059 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 203 |
| Conread position: | 73-506 |
| Cow position: | chrX:21816364-21816804 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 74-504 |
| Cow position: | chrX:2147441-2147845 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 90 |
| Conread position: | 75-506 |
| Cow position: | chrX:25453281-25453706 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 77-485 |
| Cow position: | chrX:31816795-31817188 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 80-351 |
| Cow position: | chrX:3405039-3404758 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 80-506 |
| Cow position: | chrX:9910647-9910224 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 80-517 |
| Cow position: | chrX:12688978-12688527 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 306 |
| Conread position: | 85-484 |
| Cow position: | chrX:25106322-25106738 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 308 |
| Conread position: | 86-506 |
| Cow position: | chrX:21885999-21885567 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 93-506 |
| Cow position: | chrX:4590072-4590482 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 106-361 |
| Cow position: | chrX:18517919-18518197 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 118-339 |
| Cow position: | chrX:19217182-19216946 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 129-499 |
| Cow position: | chrX:28938949-28939311 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 195 |
| Conread position: | 129-506 |
| Cow position: | chrX:19127466-19127100 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 130-517 |
| Cow position: | chrX:11982758-11983136 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 132-369 |
| Cow position: | chrX:9051276-9051029 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 132-417 |
| Cow position: | chrX:10311893-10312185 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 253 |
| Conread position: | 135-517 |
| Cow position: | chrX:40353471-40353857 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 54 |
| Conread position: | 155-493 |
| Cow position: | chrX:37956752-37957084 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 163-517 |
| Cow position: | chrX:20504888-20505249 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 177-517 |
| Cow position: | chrX:27458532-27458189 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 217 |
| Conread position: | 199-506 |
| Cow position: | chrX:6471929-6472244 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 105 |
| Conread position: | 200-506 |
| Cow position: | chrX:4625133-4625448 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 180 |
| Conread position: | 203-373 |
| Cow position: | chrX:5150469-5150302 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 204-488 |
| Cow position: | chrX:24203416-24203707 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 205-517 |
| Cow position: | chrX:18700128-18699814 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 183 |
| Conread position: | 206-420 |
| Cow position: | chrX:4629768-4629539 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 208-452 |
| Cow position: | chrX:37364653-37364901 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 160 |
| Conread position: | 208-486 |
| Cow position: | chrX:24952124-24951855 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 208-506 |
| Cow position: | chrX:2700869-2700572 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 208-547 |
| Cow position: | chrX:46372821-46372488 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 209-364 |
| Cow position: | chrX:5660283-5660444 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 209-436 |
| Cow position: | chrX:37067259-37067489 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 178 |
| Conread position: | 209-516 |
| Cow position: | chrX:10534317-10534619 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 210-506 |
| Cow position: | chrX:25921545-25921268 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 210-508 |
| Cow position: | chrX:24886545-24886259 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 210-508 |
| Cow position: | chrX:32546130-32546438 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 60, 213 |
| Conread position: | 213-437 |
| Cow position: | chrX:4794251-4794031 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 213-517 |
| Cow position: | chrX:18467697-18468008 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 253-489 |
| Cow position: | chrX:40698525-40698748 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 255-506 |
| Cow position: | chrX:37236296-37236536 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 257-506 |
| Cow position: | chrX:4631087-4630841 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 260-516 |
| Cow position: | chrX:37980679-37980927 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 261-433 |
| Cow position: | chrX:13060833-13061004 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 263-461 |
| Cow position: | chrX:39190943-39190747 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 268-506 |
| Cow position: | chrX:4440154-4440387 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 169, 38 |
| Conread position: | 269-404 |
| Cow position: | chrX:25653412-25653544 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 269-506 |
| Cow position: | chrX:4601343-4601108 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 270-517 |
| Cow position: | chrX:4948178-4947953 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 271-517 |
| Cow position: | chrX:13403445-13403203 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 301-506 |
| Cow position: | chrX:1330465-1330264 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 126, 76 |
| Conread position: | 320-455 |
| Cow position: | chrX:38892193-38892060 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 110, 56 |
| Conread position: | 336-517 |
| Cow position: | chrX:5956968-5956793 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 381-517 |
| Cow position: | chrX:16817059-16817191 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 395-504 |
| Cow position: | chrX:1427693-1427807 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.