Cow genome map
| Conread name: | rnca04b_c8.y1 |
| Conread position: | 1-395 |
| Cow position: | chrX:2142354-2142728 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 9-373 |
| Cow position: | chrX:18532020-18532410 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 167 |
| Conread position: | 9-375 |
| Cow position: | chrX:22131653-22131284 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 173 |
| Conread position: | 9-379 |
| Cow position: | chrX:17669357-17668993 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 170 |
| Conread position: | 9-447 |
| Cow position: | chrX:19185892-19185444 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 184 |
| Conread position: | 9-453 |
| Cow position: | chrX:13051734-13052177 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 101 |
| Conread position: | 9-455 |
| Cow position: | chrX:30369929-30369465 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 9-455 |
| Cow position: | chrX:34987710-34988153 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 164 |
| Conread position: | 11-341 |
| Cow position: | chrX:21271122-21270798 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 12-348 |
| Cow position: | chrX:24376417-24376744 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 38-293 |
| Cow position: | chrX:22894295-22894041 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 152 |
| Conread position: | 39-455 |
| Cow position: | chrX:12998491-12998077 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 152, 21 |
| Conread position: | 89-271 |
| Cow position: | chrX:12974538-12974357 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 89-453 |
| Cow position: | chrX:25332220-25332585 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 95-373 |
| Cow position: | chrX:28549031-28549308 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 89 |
| Conread position: | 97-409 |
| Cow position: | chrX:28604936-28604635 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 100-289 |
| Cow position: | chrX:31372092-31372280 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 101-335 |
| Cow position: | chrX:17887733-17887965 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 188, 27 |
| Conread position: | 105-382 |
| Cow position: | chrX:21586159-21586438 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 110-338 |
| Cow position: | chrX:30144351-30144123 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 175, 72 |
| Conread position: | 110-452 |
| Cow position: | chrX:21602047-21602393 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 185, 62 |
| Conread position: | 110-455 |
| Cow position: | chrX:22777488-22777823 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 110-455 |
| Cow position: | chrX:29283879-29284240 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 185, 72 |
| Conread position: | 110-455 |
| Cow position: | chrX:30046959-30046607 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 183, 71 |
| Conread position: | 110-455 |
| Cow position: | chrX:30990794-30990446 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 114-455 |
| Cow position: | chrX:39716983-39717306 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 237, 30 |
| Conread position: | 123-415 |
| Cow position: | chrX:28553178-28553470 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 173, 64 |
| Conread position: | 144-425 |
| Cow position: | chrX:26504371-26504644 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 190, 37 |
| Conread position: | 144-428 |
| Cow position: | chrX:40057868-40057581 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 151, 7 |
| Conread position: | 144-455 |
| Cow position: | chrX:21290295-21289977 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 146-453 |
| Cow position: | chrX:13007436-13007126 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 124, 42 |
| Conread position: | 156-368 |
| Cow position: | chrX:35019849-35020064 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 181-343 |
| Cow position: | chrX:29883033-29882870 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 264-455 |
| Cow position: | chrX:18532318-18532513 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 6 |
Show alignments to all cow chromosomes.