Non-Coding RNA Search

Cow genome map


           Conread name:
           rpigcf0_008845.y1
        

               Conread position:
               1-448
               

               Cow position:
               chr1:42256836-42256383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 297
               

               Conread position:
               11-448
               

               Cow position:
               chr1:29916102-29916530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 97
               

               Conread position:
               11-506
               

               Cow position:
               chr1:95017827-95017365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 42
               

               Conread position:
               11-508
               

               Cow position:
               chr1:23041259-23041741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 102
               

               Conread position:
               11-508
               

               Cow position:
               chr1:35844243-35843744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               11-508
               

               Cow position:
               chr1:77462050-77462536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               11-508
               

               Cow position:
               chr1:95100650-95101148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 49
               

               Conread position:
               12-508
               

               Cow position:
               chr1:97622517-97622042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 189
               

               Conread position:
               14-434
               

               Cow position:
               chr1:33331383-33330989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               97, 47
               

               Conread position:
               15-401
               

               Cow position:
               chr1:72624802-72625188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               102, 277
               

               Conread position:
               15-427
               

               Cow position:
               chr1:48444490-48444096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 46
               

               Conread position:
               15-434
               

               Cow position:
               chr1:63435115-63434701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 93
               

               Conread position:
               15-434
               

               Cow position:
               chr1:82884697-82884290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 89
               

               Conread position:
               15-448
               

               Cow position:
               chr1:7739661-7740066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               15-449
               

               Cow position:
               chr1:42359945-42360408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 440
               

               Conread position:
               16-279
               

               Cow position:
               chr1:54732755-54732515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               16-279
               

               Cow position:
               chr1:91733570-91733839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               16-284
               

               Cow position:
               chr1:26514662-26514392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               16-284
               

               Cow position:
               chr1:44136762-44136508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               16-288
               

               Cow position:
               chr1:81859538-81859266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               159, 88
               

               Conread position:
               16-297
               

               Cow position:
               chr1:15311557-15311840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               93, 174
               

               Conread position:
               16-300
               

               Cow position:
               chr1:80869795-80870089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               93, 214
               

               Conread position:
               16-301
               

               Cow position:
               chr1:83982687-83982395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               16-304
               

               Cow position:
               chr1:27495187-27495463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               16-313
               

               Cow position:
               chr1:76851042-76850740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               14, 141
               

               Conread position:
               16-346
               

               Cow position:
               chr1:68782970-68782621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               47, 109
               

               Conread position:
               16-354
               

               Cow position:
               chr1:78783235-78783572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 267
               

               Conread position:
               16-362
               

               Cow position:
               chr1:69866514-69866170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               101, 246
               

               Conread position:
               16-364
               

               Cow position:
               chr1:9444151-9443815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               154, 65
               

               Conread position:
               16-364
               

               Cow position:
               chr1:17032647-17032298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               101, 275
               

               Conread position:
               16-366
               

               Cow position:
               chr1:3035301-3034963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               93, 41
               

               Conread position:
               16-367
               

               Cow position:
               chr1:13404437-13404085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               101, 41
               

               Conread position:
               16-367
               

               Cow position:
               chr1:84447631-84447982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               100, 250
               

               Conread position:
               16-369
               

               Cow position:
               chr1:43380334-43379985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 37
               

               Conread position:
               16-369
               

               Cow position:
               chr1:73561960-73561608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 74
               

               Conread position:
               16-373
               

               Cow position:
               chr1:21091209-21091568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 250
               

               Conread position:
               16-373
               

               Cow position:
               chr1:40578466-40578825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               99, 93
               

               Conread position:
               16-373
               

               Cow position:
               chr1:55163614-55163962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-373
               

               Cow position:
               chr1:60114719-60115078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 250
               

               Conread position:
               16-373
               

               Cow position:
               chr1:73433182-73432823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               101, 276
               

               Conread position:
               16-373
               

               Cow position:
               chr1:81350138-81349777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               97, 93
               

               Conread position:
               16-373
               

               Cow position:
               chr1:84556714-84556355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               101, 295
               

               Conread position:
               16-373
               

               Cow position:
               chr1:86597505-86597863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               85, 277
               

               Conread position:
               16-373
               

               Cow position:
               chr1:91674180-91674539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               101, 295
               

               Conread position:
               16-384
               

               Cow position:
               chr1:100771045-100770698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               16-388
               

               Cow position:
               chr1:56719002-56719360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               89, 122
               

               Conread position:
               16-391
               

               Cow position:
               chr1:61724331-61723958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               16-394
               

               Cow position:
               chr1:53595014-53595383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 177
               

               Conread position:
               16-397
               

               Cow position:
               chr1:4374649-4374270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 189
               

               Conread position:
               16-397
               

               Cow position:
               chr1:55135532-55135903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               329, 54
               

               Conread position:
               16-397
               

               Cow position:
               chr1:91817082-91816704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 48
               

               Conread position:
               16-399
               

               Cow position:
               chr1:47544452-47544834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               62, 94
               

               Conread position:
               16-399
               

               Cow position:
               chr1:63596370-63595985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               51, 8
               

               Conread position:
               16-399
               

               Cow position:
               chr1:71822231-71821839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               87, 340
               

               Conread position:
               16-399
               

               Cow position:
               chr1:85361544-85361920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 241
               

               Conread position:
               16-399
               

               Cow position:
               chr1:86599044-86598662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               89, 51
               

               Conread position:
               16-399
               

               Cow position:
               chr1:102647580-102647204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 174
               

               Conread position:
               16-408
               

               Cow position:
               chr1:46693967-46693575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               269
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               98, 111
               

               Conread position:
               16-408
               

               Cow position:
               chr1:52753477-52753081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 254
               

               Conread position:
               16-408
               

               Cow position:
               chr1:70296957-70297357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 63
               

               Conread position:
               16-412
               

               Cow position:
               chr1:86113724-86113317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 143
               

               Conread position:
               16-412
               

               Cow position:
               chr1:92433710-92434083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               93, 24
               

               Conread position:
               16-417
               

               Cow position:
               chr1:63391083-63390679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 94
               

               Conread position:
               16-418
               

               Cow position:
               chr1:85596635-85597027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 79
               

               Conread position:
               16-424
               

               Cow position:
               chr1:3323543-3323966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 45
               

               Conread position:
               16-424
               

               Cow position:
               chr1:90868749-90868346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 139
               

               Conread position:
               16-425
               

               Cow position:
               chr1:99808039-99807620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 134
               

               Conread position:
               16-432
               

               Cow position:
               chr1:21577496-21577911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 49
               

               Conread position:
               16-432
               

               Cow position:
               chr1:34300859-34300449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 174
               

               Conread position:
               16-434
               

               Cow position:
               chr1:26702508-26702102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 50
               

               Conread position:
               16-434
               

               Cow position:
               chr1:41696750-41697160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 63
               

               Conread position:
               16-434
               

               Cow position:
               chr1:51394099-51394523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 186
               

               Conread position:
               16-434
               

               Cow position:
               chr1:81228642-81228229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 88
               

               Conread position:
               16-434
               

               Cow position:
               chr1:81356014-81355598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 176
               

               Conread position:
               16-434
               

               Cow position:
               chr1:89834924-89835355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               114, 290
               

               Conread position:
               16-434
               

               Cow position:
               chr1:91039470-91039069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               329, 88
               

               Conread position:
               16-439
               

               Cow position:
               chr1:6795243-6794816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 49
               

               Conread position:
               16-439
               

               Cow position:
               chr1:45289182-45288761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 49
               

               Conread position:
               16-440
               

               Cow position:
               chr1:100740976-100741389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 98
               

               Conread position:
               16-441
               

               Cow position:
               chr1:72035240-72034812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 115
               

               Conread position:
               16-443
               

               Cow position:
               chr1:37309821-37309405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 88
               

               Conread position:
               16-443
               

               Cow position:
               chr1:43822066-43822513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 314
               

               Conread position:
               16-443
               

               Cow position:
               chr1:100421534-100421934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               33, 46
               

               Conread position:
               16-446
               

               Cow position:
               chr1:53424881-53425294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 49
               

               Conread position:
               16-447
               

               Cow position:
               chr1:22628950-22628532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               287
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               89, 142
               

               Conread position:
               16-447
               

               Cow position:
               chr1:45007155-45007586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 231
               

               Conread position:
               16-447
               

               Cow position:
               chr1:53374123-53374546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 159
               

               Conread position:
               16-447
               

               Cow position:
               chr1:73960389-73960818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 211
               

               Conread position:
               16-447
               

               Cow position:
               chr1:98551409-98551837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 37
               

               Conread position:
               16-447
               

               Cow position:
               chr1:99642674-99642251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 35
               

               Conread position:
               16-448
               

               Cow position:
               chr1:31348743-31348318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               16-448
               

               Cow position:
               chr1:53308703-53308275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 194
               

               Conread position:
               16-448
               

               Cow position:
               chr1:69695317-69694874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               16-448
               

               Cow position:
               chr1:76019991-76019578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               16-448
               

               Cow position:
               chr1:80336561-80336130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 99
               

               Conread position:
               16-448
               

               Cow position:
               chr1:97231665-97232079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               95, 123
               

               Conread position:
               16-449
               

               Cow position:
               chr1:874332-874774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               16-449
               

               Cow position:
               chr1:36874707-36875146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-449
               

               Cow position:
               chr1:54258261-54258686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               16-449
               

               Cow position:
               chr1:55357591-55357175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 57
               

               Conread position:
               16-449
               

               Cow position:
               chr1:61005873-61005443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-449
               

               Cow position:
               chr1:84255443-84255887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               16-449
               

               Cow position:
               chr1:84282750-84283193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 296
               

               Conread position:
               16-452
               

               Cow position:
               chr1:89342300-89341857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 92
               

               Conread position:
               16-462
               

               Cow position:
               chr1:10719801-10719348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 214
               

               Conread position:
               16-466
               

               Cow position:
               chr1:31499316-31499761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 172
               

               Conread position:
               16-466
               

               Cow position:
               chr1:80988038-80988484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 51
               

               Conread position:
               16-471
               

               Cow position:
               chr1:11226556-11226107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 232
               

               Conread position:
               16-473
               

               Cow position:
               chr1:41735929-41735477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               16-473
               

               Cow position:
               chr1:80973934-80973465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 315
               

               Conread position:
               16-485
               

               Cow position:
               chr1:31414276-31413822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 183
               

               Conread position:
               16-485
               

               Cow position:
               chr1:88911206-88910745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 8
               

               Conread position:
               16-487
               

               Cow position:
               chr1:30441643-30442114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 89
               

               Conread position:
               16-498
               

               Cow position:
               chr1:54199691-54199207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 94
               

               Conread position:
               16-500
               

               Cow position:
               chr1:92963079-92963566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 213
               

               Conread position:
               16-503
               

               Cow position:
               chr1:41181531-41182028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 14
               

               Conread position:
               16-505
               

               Cow position:
               chr1:71135854-71136325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 48
               

               Conread position:
               16-505
               

               Cow position:
               chr1:100400509-100400010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 45
               

               Conread position:
               16-505
               

               Cow position:
               chr1:101634394-101634893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 29
               

               Conread position:
               16-506
               

               Cow position:
               chr1:34159524-34160023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 44
               

               Conread position:
               16-506
               

               Cow position:
               chr1:66356020-66355538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 155
               

               Conread position:
               16-506
               

               Cow position:
               chr1:81913460-81912979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:12871332-12870813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 190
               

               Conread position:
               16-508
               

               Cow position:
               chr1:19465748-19466233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 174
               

               Conread position:
               16-508
               

               Cow position:
               chr1:21678833-21679326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 5
               

               Conread position:
               16-508
               

               Cow position:
               chr1:28176703-28177177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               337
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               95, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:35162093-35162602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 304
               

               Conread position:
               16-508
               

               Cow position:
               chr1:46218270-46218747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 154
               

               Conread position:
               16-508
               

               Cow position:
               chr1:57119654-57119169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:61392104-61391599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 127
               

               Conread position:
               16-508
               

               Cow position:
               chr1:61564483-61564978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:69539386-69539882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 119
               

               Conread position:
               16-508
               

               Cow position:
               chr1:71045440-71045932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 212
               

               Conread position:
               16-508
               

               Cow position:
               chr1:72012117-72011625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82378485-82378969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 44
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82880354-82880828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 109
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82936895-82936408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 160
               

               Conread position:
               16-508
               

               Cow position:
               chr1:91066459-91065960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 152
               

               Conread position:
               16-508
               

               Cow position:
               chr1:95176624-95177115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 209
               

               Conread position:
               16-508
               

               Cow position:
               chr1:100551651-100552163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 185
               

               Conread position:
               17-392
               

               Cow position:
               chr1:24235828-24235457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 93
               

               Conread position:
               17-404
               

               Cow position:
               chr1:44769419-44769034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 62
               

               Conread position:
               17-430
               

               Cow position:
               chr1:26943000-26943409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               280
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               62, 40
               

               Conread position:
               17-443
               

               Cow position:
               chr1:41056373-41056792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 117
               

               Conread position:
               17-443
               

               Cow position:
               chr1:95215486-95215076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               17-448
               

               Cow position:
               chr1:69264512-69264927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 154
               

               Conread position:
               17-449
               

               Cow position:
               chr1:94226858-94226435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 171
               

               Conread position:
               17-455
               

               Cow position:
               chr1:102266581-102266143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 142
               

               Conread position:
               17-504
               

               Cow position:
               chr1:30066327-30066795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 156
               

               Conread position:
               17-504
               

               Cow position:
               chr1:31190414-31189941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 110
               

               Conread position:
               17-508
               

               Cow position:
               chr1:39418428-39417934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 149
               

               Conread position:
               18-287
               

               Cow position:
               chr1:21092783-21093053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               91, 34
               

               Conread position:
               18-309
               

               Cow position:
               chr1:23634206-23633929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               91, 36
               

               Conread position:
               18-363
               

               Cow position:
               chr1:22467619-22467968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 268
               

               Conread position:
               18-372
               

               Cow position:
               chr1:44164771-44165128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 47
               

               Conread position:
               18-403
               

               Cow position:
               chr1:21934488-21934100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 18
               

               Conread position:
               18-448
               

               Cow position:
               chr1:51968161-51968580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 127
               

               Conread position:
               18-449
               

               Cow position:
               chr1:72069136-72068714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 131
               

               Conread position:
               18-451
               

               Cow position:
               chr1:98360723-98360282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 279
               

               Conread position:
               18-497
               

               Cow position:
               chr1:7233009-7233474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               323
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               141, 60
               

               Conread position:
               18-507
               

               Cow position:
               chr1:20099052-20099543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 214
               

               Conread position:
               18-508
               

               Cow position:
               chr1:61721676-61721210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               334
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               51, 149
               

               Conread position:
               20-369
               

               Cow position:
               chr1:22448891-22448542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 89
               

               Conread position:
               20-434
               

               Cow position:
               chr1:53622661-53623060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               20-449
               

               Cow position:
               chr1:1877719-1878140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 171
               

               Conread position:
               21-439
               

               Cow position:
               chr1:7350232-7350658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 204
               

               Conread position:
               21-449
               

               Cow position:
               chr1:74822144-74822571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               21-506
               

               Cow position:
               chr1:21787017-21787519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 208
               

               Conread position:
               22-447
               

               Cow position:
               chr1:36613580-36613142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 199
               

               Conread position:
               22-508
               

               Cow position:
               chr1:20001056-20000559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 15
               

               Conread position:
               22-508
               

               Cow position:
               chr1:35170032-35170505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 200
               

               Conread position:
               23-508
               

               Cow position:
               chr1:63504037-63504511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 45
               

               Conread position:
               24-471
               

               Cow position:
               chr1:8319-8755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 163
               

               Conread position:
               26-434
               

               Cow position:
               chr1:89349676-89350070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 129
               

               Conread position:
               27-440
               

               Cow position:
               chr1:31934213-31934618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 162
               

               Conread position:
               27-440
               

               Cow position:
               chr1:66138020-66138429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               82, 40
               

               Conread position:
               27-475
               

               Cow position:
               chr1:48731124-48730687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 38
               

               Conread position:
               27-504
               

               Cow position:
               chr1:77720527-77720067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 65
               

               Conread position:
               29-350
               

               Cow position:
               chr1:73522440-73522127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               29-504
               

               Cow position:
               chr1:26688776-26688298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               30-301
               

               Cow position:
               chr1:101547339-101547059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               79, 271
               

               Conread position:
               30-408
               

               Cow position:
               chr1:94875975-94875595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               81, 137
               

               Conread position:
               30-426
               

               Cow position:
               chr1:87888109-87888482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               30-432
               

               Cow position:
               chr1:15037036-15037428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 80
               

               Conread position:
               31-434
               

               Cow position:
               chr1:25383366-25383773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               31-449
               

               Cow position:
               chr1:81613089-81613509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 194
               

               Conread position:
               32-284
               

               Cow position:
               chr1:24528892-24528650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               79, 33
               

               Conread position:
               32-383
               

               Cow position:
               chr1:77132309-77132663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               33-449
               

               Cow position:
               chr1:29627209-29626793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 159
               

               Conread position:
               34-312
               

               Cow position:
               chr1:34000612-34000896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               75, 270
               

               Conread position:
               34-397
               

               Cow position:
               chr1:1991723-1991351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 196
               

               Conread position:
               35-426
               

               Cow position:
               chr1:90640733-90641125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 340
               

               Conread position:
               36-307
               

               Cow position:
               chr1:50634706-50634420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               27, 199
               

               Conread position:
               39-293
               

               Cow position:
               chr1:95327444-95327184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               7, 191
               

               Conread position:
               46-449
               

               Cow position:
               chr1:1956611-1956215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 177
               

               Conread position:
               46-452
               

               Cow position:
               chr1:72286330-72285945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 127
               

               Conread position:
               49-449
               

               Cow position:
               chr1:21954500-21954104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               30, 176
               

               Conread position:
               50-426
               

               Cow position:
               chr1:74939920-74940297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               124, 253
               

               Conread position:
               54-293
               

               Cow position:
               chr1:56711895-56711652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               7, 61
               

               Conread position:
               54-299
               

               Cow position:
               chr1:78689660-78689909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               44, 109
               

               Conread position:
               55-308
               

               Cow position:
               chr1:49839233-49839487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               11, 174
               

               Conread position:
               55-435
               

               Cow position:
               chr1:16855960-16855593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 53
               

               Conread position:
               55-448
               

               Cow position:
               chr1:84240628-84240999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               56, 118
               

               Conread position:
               55-449
               

               Cow position:
               chr1:4032364-4032752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 16
               

               Conread position:
               57-434
               

               Cow position:
               chr1:39510311-39509953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               109, 9
               

               Conread position:
               57-448
               

               Cow position:
               chr1:73196510-73196110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 173
               

               Conread position:
               57-508
               

               Cow position:
               chr1:46940132-46939680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               57, 190
               

               Conread position:
               60-364
               

               Cow position:
               chr1:102826080-102825785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               51, 113
               

               Conread position:
               60-505
               

               Cow position:
               chr1:25793708-25793264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 184
               

               Conread position:
               64-306
               

               Cow position:
               chr1:81363729-81363970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               64-312
               

               Cow position:
               chr1:14379794-14379548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               11, 78
               

               Conread position:
               64-449
               

               Cow position:
               chr1:50931230-50930859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 15
               

               Conread position:
               65-318
               

               Cow position:
               chr1:77657804-77658059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               46, 158
               

               Conread position:
               65-399
               

               Cow position:
               chr1:96478432-96478769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               14, 107
               

               Conread position:
               65-449
               

               Cow position:
               chr1:52994762-52995146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 159
               

               Conread position:
               65-504
               

               Cow position:
               chr1:80764797-80764361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 156
               

               Conread position:
               65-508
               

               Cow position:
               chr1:39427243-39426820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 108
               

               Conread position:
               66-310
               

               Cow position:
               chr1:84116141-84116380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               45, 89
               

               Conread position:
               66-318
               

               Cow position:
               chr1:55202875-55202630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               246, 49
               

               Conread position:
               66-426
               

               Cow position:
               chr1:55146540-55146895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 142
               

               Conread position:
               66-427
               

               Cow position:
               chr1:69540020-69540380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 176
               

               Conread position:
               66-434
               

               Cow position:
               chr1:80899847-80900224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 164
               

               Conread position:
               66-443
               

               Cow position:
               chr1:82338046-82337666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 69
               

               Conread position:
               66-448
               

               Cow position:
               chr1:48580869-48581247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               66-449
               

               Cow position:
               chr1:39069214-39068836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 107
               

               Conread position:
               66-449
               

               Cow position:
               chr1:41252664-41252290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               275
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               43, 157
               

               Conread position:
               66-473
               

               Cow position:
               chr1:11020774-11021164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 158
               

               Conread position:
               66-508
               

               Cow position:
               chr1:10064240-10063808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 160
               

               Conread position:
               66-508
               

               Cow position:
               chr1:54478061-54478513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 158
               

               Conread position:
               66-508
               

               Cow position:
               chr1:56643849-56643426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               300
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               43, 7
               

               Conread position:
               67-419
               

               Cow position:
               chr1:92642697-92642359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               67-449
               

               Cow position:
               chr1:4290898-4291284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 310
               

               Conread position:
               67-449
               

               Cow position:
               chr1:38278305-38277909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 236
               

               Conread position:
               67-482
               

               Cow position:
               chr1:31390844-31390435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               67-506
               

               Cow position:
               chr1:31871160-31871604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 159
               

               Conread position:
               68-508
               

               Cow position:
               chr1:46839335-46839786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 262
               

               Conread position:
               70-311
               

               Cow position:
               chr1:33701863-33702103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 104
               

               Conread position:
               70-397
               

               Cow position:
               chr1:60707146-60707470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               41, 166
               

               Conread position:
               70-414
               

               Cow position:
               chr1:79165349-79164998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 234
               

               Conread position:
               70-423
               

               Cow position:
               chr1:30413328-30413684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               46, 128
               

               Conread position:
               70-432
               

               Cow position:
               chr1:16767342-16766986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               39, 155
               

               Conread position:
               70-440
               

               Cow position:
               chr1:57297239-57297591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               145, 24
               

               Conread position:
               70-447
               

               Cow position:
               chr1:43505266-43505647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 97
               

               Conread position:
               70-447
               

               Cow position:
               chr1:68619194-68618815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 57
               

               Conread position:
               70-447
               

               Cow position:
               chr1:76470402-76470761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 94
               

               Conread position:
               70-447
               

               Cow position:
               chr1:84812193-84811821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               70-506
               

               Cow position:
               chr1:22777808-22777367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 158
               

               Conread position:
               70-508
               

               Cow position:
               chr1:23099640-23100079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 161
               

               Conread position:
               70-508
               

               Cow position:
               chr1:42555013-42555440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 84
               

               Conread position:
               71-300
               

               Cow position:
               chr1:52506800-52506581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               46, 94
               

               Conread position:
               71-311
               

               Cow position:
               chr1:80555435-80555210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               71-338
               

               Cow position:
               chr1:78794991-78794729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               71-342
               

               Cow position:
               chr1:56408357-56408630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 179
               

               Conread position:
               71-364
               

               Cow position:
               chr1:32244655-32244361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               53, 38
               

               Conread position:
               71-383
               

               Cow position:
               chr1:49131378-49131057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               36, 260
               

               Conread position:
               71-386
               

               Cow position:
               chr1:57264242-57263940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 99
               

               Conread position:
               71-445
               

               Cow position:
               chr1:85774203-85774573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 151
               

               Conread position:
               71-447
               

               Cow position:
               chr1:72141308-72141690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               269
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 99
               

               Conread position:
               71-448
               

               Cow position:
               chr1:6941210-6941587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 155
               

               Conread position:
               71-448
               

               Cow position:
               chr1:6958623-6959000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 155
               

               Conread position:
               71-448
               

               Cow position:
               chr1:75744604-75744981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 156
               

               Conread position:
               71-451
               

               Cow position:
               chr1:93810187-93810551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               71-466
               

               Cow position:
               chr1:5162309-5161918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 88
               

               Conread position:
               71-466
               

               Cow position:
               chr1:81868983-81868597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 107
               

               Conread position:
               71-504
               

               Cow position:
               chr1:100324982-100324565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               303
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               38, 84
               

               Conread position:
               71-506
               

               Cow position:
               chr1:95765345-95764917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 155
               

               Conread position:
               71-508
               

               Cow position:
               chr1:34685939-34686362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 149
               

               Conread position:
               71-508
               

               Cow position:
               chr1:64302488-64302053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               279, 98
               

               Conread position:
               71-508
               

               Cow position:
               chr1:70534190-70533760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 151
               

               Conread position:
               71-508
               

               Cow position:
               chr1:93110881-93110435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 154
               

               Conread position:
               72-286
               

               Cow position:
               chr1:61246406-61246199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               73-423
               

               Cow position:
               chr1:6939893-6939542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 160
               

               Conread position:
               73-425
               

               Cow position:
               chr1:34856883-34856532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 82
               

               Conread position:
               73-506
               

               Cow position:
               chr1:53039953-53039533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 50
               

               Conread position:
               73-506
               

               Cow position:
               chr1:68827159-68826729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 230
               

               Conread position:
               73-508
               

               Cow position:
               chr1:61736849-61737274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 99
               

               Conread position:
               74-432
               

               Cow position:
               chr1:33997165-33996822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               37, 145
               

               Conread position:
               74-452
               

               Cow position:
               chr1:78810783-78811162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 150
               

               Conread position:
               75-413
               

               Cow position:
               chr1:68951380-68951709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               75-446
               

               Cow position:
               chr1:36931907-36932271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 93
               

               Conread position:
               75-451
               

               Cow position:
               chr1:10632801-10633167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 119
               

               Conread position:
               75-508
               

               Cow position:
               chr1:78791559-78791130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 126
               

               Conread position:
               76-335
               

               Cow position:
               chr1:50679537-50679275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 229
               

               Conread position:
               76-449
               

               Cow position:
               chr1:78857573-78857209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 146
               

               Conread position:
               76-505
               

               Cow position:
               chr1:42138614-42139033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 133
               

               Conread position:
               76-508
               

               Cow position:
               chr1:37322256-37321813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 148
               

               Conread position:
               77-294
               

               Cow position:
               chr1:98708192-98708408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               32, 105
               

               Conread position:
               77-303
               

               Cow position:
               chr1:19998285-19998065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               34, 143
               

               Conread position:
               77-346
               

               Cow position:
               chr1:3776864-3776604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               32, 123
               

               Conread position:
               77-383
               

               Cow position:
               chr1:45535452-45535760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 148
               

               Conread position:
               77-397
               

               Cow position:
               chr1:1165350-1165666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 170
               

               Conread position:
               77-443
               

               Cow position:
               chr1:37707219-37706863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 149
               

               Conread position:
               77-449
               

               Cow position:
               chr1:74084439-74084071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 32
               

               Conread position:
               77-482
               

               Cow position:
               chr1:29975847-29975454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 96
               

               Conread position:
               77-505
               

               Cow position:
               chr1:19482324-19481906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               28, 100
               

               Conread position:
               77-505
               

               Cow position:
               chr1:74947367-74946945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 47
               

               Conread position:
               79-343
               

               Cow position:
               chr1:75967188-75967443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               79-408
               

               Cow position:
               chr1:1185491-1185808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               30, 155
               

               Conread position:
               79-421
               

               Cow position:
               chr1:5023988-5023670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 90
               

               Conread position:
               79-442
               

               Cow position:
               chr1:89485343-89485693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 29
               

               Conread position:
               79-449
               

               Cow position:
               chr1:24534491-24534137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               30, 66
               

               Conread position:
               79-449
               

               Cow position:
               chr1:47233723-47233358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               79-497
               

               Cow position:
               chr1:93528442-93528880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 224
               

               Conread position:
               79-508
               

               Cow position:
               chr1:3924042-3923607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 65
               

               Conread position:
               80-368
               

               Cow position:
               chr1:3244603-3244889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               80-431
               

               Cow position:
               chr1:3137686-3138016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               80-508
               

               Cow position:
               chr1:56477348-56477782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               81-307
               

               Cow position:
               chr1:63905720-63905490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               81-447
               

               Cow position:
               chr1:45555116-45555483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 142
               

               Conread position:
               81-447
               

               Cow position:
               chr1:102105488-102105852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 85
               

               Conread position:
               81-449
               

               Cow position:
               chr1:98594325-98594685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 110
               

               Conread position:
               81-508
               

               Cow position:
               chr1:59650020-59650448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               82-448
               

               Cow position:
               chr1:71119266-71119638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 83
               

               Conread position:
               83-447
               

               Cow position:
               chr1:64804353-64803984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 196
               

               Conread position:
               83-451
               

               Cow position:
               chr1:15333639-15334013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               271
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               83-508
               

               Cow position:
               chr1:69415956-69415532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 15
               

               Conread position:
               84-440
               

               Cow position:
               chr1:3962927-3962576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 72
               

               Conread position:
               87-449
               

               Cow position:
               chr1:78809644-78809996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               87-508
               

               Cow position:
               chr1:64189262-64189679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 94
               

               Conread position:
               89-305
               

               Cow position:
               chr1:81277439-81277223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               21, 71
               

               Conread position:
               89-319
               

               Cow position:
               chr1:20287879-20288106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               83, 21
               

               Conread position:
               89-334
               

               Cow position:
               chr1:88530025-88529793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               89-396
               

               Cow position:
               chr1:24597414-24597721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               20, 101
               

               Conread position:
               89-425
               

               Cow position:
               chr1:26729490-26729810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               18, 98
               

               Conread position:
               89-448
               

               Cow position:
               chr1:40531347-40530984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               89-449
               

               Cow position:
               chr1:95056817-95057165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               89-464
               

               Cow position:
               chr1:62732337-62732704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               20, 135
               

               Conread position:
               89-503
               

               Cow position:
               chr1:76096201-76096606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 105
               

               Conread position:
               89-508
               

               Cow position:
               chr1:25281914-25281480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               89-508
               

               Cow position:
               chr1:44506730-44507165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               89-508
               

               Cow position:
               chr1:51256798-51257192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               89-508
               

               Cow position:
               chr1:70236531-70236090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               90-353
               

               Cow position:
               chr1:71818699-71818439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               13, 134
               

               Conread position:
               90-433
               

               Cow position:
               chr1:56634859-56635202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 107
               

               Conread position:
               90-449
               

               Cow position:
               chr1:7442748-7443096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               19, 101
               

               Conread position:
               94-286
               

               Cow position:
               chr1:86484724-86484925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               94-434
               

               Cow position:
               chr1:89381045-89381380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               94-508
               

               Cow position:
               chr1:52052936-52052536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 93
               

               Conread position:
               95-505
               

               Cow position:
               chr1:70434762-70435180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 135
               

               Conread position:
               95-508
               

               Cow position:
               chr1:6305098-6304680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               96-293
               

               Cow position:
               chr1:20799641-20799852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               15, 159
               

               Conread position:
               96-314
               

               Cow position:
               chr1:51818710-51818929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               96-363
               

               Cow position:
               chr1:100512365-100512642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               96-388
               

               Cow position:
               chr1:73761583-73761295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               13, 85
               

               Conread position:
               96-461
               

               Cow position:
               chr1:85411348-85411709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               98-317
               

               Cow position:
               chr1:51836342-51836561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               11, 70
               

               Conread position:
               98-403
               

               Cow position:
               chr1:79278671-79278373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               98-430
               

               Cow position:
               chr1:27145880-27145552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               76, 13
               

               Conread position:
               98-448
               

               Cow position:
               chr1:89076864-89076514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               7, 40
               

               Conread position:
               98-449
               

               Cow position:
               chr1:10964066-10964411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               13, 89
               

               Conread position:
               98-473
               

               Cow position:
               chr1:77118752-77118386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               98-506
               

               Cow position:
               chr1:65664836-65665228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               289
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               76, 42
               

               Conread position:
               98-508
               

               Cow position:
               chr1:18283268-18283659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               11, 104
               

               Conread position:
               100-338
               

               Cow position:
               chr1:4293835-4294064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               9, 88
               

               Conread position:
               104-449
               

               Cow position:
               chr1:49433486-49433144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 90
               

               Conread position:
               105-448
               

               Cow position:
               chr1:62036581-62036921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               69, 13
               

               Conread position:
               105-449
               

               Cow position:
               chr1:43872553-43872200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               106-449
               

               Cow position:
               chr1:76740903-76740557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               60, 31
               

               Conread position:
               108-414
               

               Cow position:
               chr1:98310843-98311157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 206
               

               Conread position:
               110-335
               

               Cow position:
               chr1:45673496-45673720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               209, 31
               

               Conread position:
               110-354
               

               Cow position:
               chr1:53540175-53540415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               45, 115
               

               Conread position:
               110-364
               

               Cow position:
               chr1:71952872-71953110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               221, 77
               

               Conread position:
               110-434
               

               Cow position:
               chr1:52956044-52956356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               235, 58
               

               Conread position:
               110-441
               

               Cow position:
               chr1:98461075-98461398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               64, 103
               

               Conread position:
               110-507
               

               Cow position:
               chr1:7971215-7971600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               239, 58
               

               Conread position:
               110-508
               

               Cow position:
               chr1:14981334-14980941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 41
               

               Conread position:
               110-508
               

               Cow position:
               chr1:74956239-74955835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 194
               

               Conread position:
               113-310
               

               Cow position:
               chr1:97785971-97786164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               102, 53
               

               Conread position:
               113-427
               

               Cow position:
               chr1:40482624-40482315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               122, 19
               

               Conread position:
               113-439
               

               Cow position:
               chr1:16962226-16961901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 183
               

               Conread position:
               113-452
               

               Cow position:
               chr1:19885172-19885504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 111
               

               Conread position:
               113-459
               

               Cow position:
               chr1:15691125-15691462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 107
               

               Conread position:
               114-448
               

               Cow position:
               chr1:34771715-34771384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               114-448
               

               Cow position:
               chr1:84015660-84015988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               48, 184
               

               Conread position:
               115-309
               

               Cow position:
               chr1:64939153-64938958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 83
               

               Conread position:
               115-319
               

               Cow position:
               chr1:5061811-5062018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               39, 110
               

               Conread position:
               116-343
               

               Cow position:
               chr1:41954463-41954229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               70, 191
               

               Conread position:
               116-396
               

               Cow position:
               chr1:95654925-95654647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 108
               

               Conread position:
               116-442
               

               Cow position:
               chr1:90976292-90975976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               116-456
               

               Cow position:
               chr1:62291895-62291575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               232, 70
               

               Conread position:
               117-434
               

               Cow position:
               chr1:100393373-100393058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               57, 106
               

               Conread position:
               117-449
               

               Cow position:
               chr1:21955582-21955255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               64, 176
               

               Conread position:
               117-502
               

               Cow position:
               chr1:58825340-58825712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 78
               

               Conread position:
               120-434
               

               Cow position:
               chr1:75141801-75142102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               92, 33
               

               Conread position:
               122-397
               

               Cow position:
               chr1:86279211-86279480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               106, 68
               

               Conread position:
               123-397
               

               Cow position:
               chr1:63138636-63138908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               105, 171
               

               Conread position:
               123-449
               

               Cow position:
               chr1:28563771-28563449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 144
               

               Conread position:
               123-449
               

               Cow position:
               chr1:46030555-46030246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               231, 49
               

               Conread position:
               124-508
               

               Cow position:
               chr1:43340824-43340436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               50, 179
               

               Conread position:
               125-294
               

               Cow position:
               chr1:49753730-49753896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               125-449
               

               Cow position:
               chr1:94261347-94261655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               223, 51
               

               Conread position:
               126-363
               

               Cow position:
               chr1:81470929-81471166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 97
               

               Conread position:
               126-506
               

               Cow position:
               chr1:89547990-89548363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               96, 81
               

               Conread position:
               127-403
               

               Cow position:
               chr1:51654212-51654498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               183, 0
               

               Conread position:
               127-434
               

               Cow position:
               chr1:724536-724845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               128-451
               

               Cow position:
               chr1:51417577-51417893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               17, 70
               

               Conread position:
               131-432
               

               Cow position:
               chr1:25734659-25734969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               40, 172
               

               Conread position:
               132-372
               

               Cow position:
               chr1:82443650-82443412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               216, 164
               

               Conread position:
               132-448
               

               Cow position:
               chr1:32001514-32001202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               156, 54
               

               Conread position:
               132-481
               

               Cow position:
               chr1:89443670-89443328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 88
               

               Conread position:
               132-508
               

               Cow position:
               chr1:9533981-9534339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 57
               

               Conread position:
               133-304
               

               Cow position:
               chr1:83594000-83593827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               41, 28
               

               Conread position:
               133-383
               

               Cow position:
               chr1:70028386-70028633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               41, 90
               

               Conread position:
               133-420
               

               Cow position:
               chr1:70026534-70026254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 28
               

               Conread position:
               137-482
               

               Cow position:
               chr1:75933084-75933416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 83
               

               Conread position:
               141-361
               

               Cow position:
               chr1:3243754-3243967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               207, 42
               

               Conread position:
               142-451
               

               Cow position:
               chr1:84235514-84235210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               144-506
               

               Cow position:
               chr1:20581767-20582117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               99, 77
               

               Conread position:
               144-508
               

               Cow position:
               chr1:24188051-24188399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               107, 123
               

               Conread position:
               145-384
               

               Cow position:
               chr1:182633-182858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               204, 24
               

               Conread position:
               145-505
               

               Cow position:
               chr1:38753739-38754111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               80, 15
               

               Conread position:
               146-508
               

               Cow position:
               chr1:13195604-13195255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               26, 78
               

               Conread position:
               147-461
               

               Cow position:
               chr1:50345364-50345677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               147-505
               

               Cow position:
               chr1:28678347-28678698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               27, 80
               

               Conread position:
               147-508
               

               Cow position:
               chr1:79115157-79115524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 48
               

               Conread position:
               148-449
               

               Cow position:
               chr1:65318401-65318694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               80, 6
               

               Conread position:
               149-440
               

               Cow position:
               chr1:60281190-60281484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               149-449
               

               Cow position:
               chr1:55429136-55428836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               25, 77
               

               Conread position:
               150-373
               

               Cow position:
               chr1:765743-765522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               150-415
               

               Cow position:
               chr1:6788460-6788197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 11
               

               Conread position:
               150-426
               

               Cow position:
               chr1:67305419-67305144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               151-399
               

               Cow position:
               chr1:19568674-19568920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               154-449
               

               Cow position:
               chr1:81580006-81580297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               140, 26
               

               Conread position:
               156-323
               

               Cow position:
               chr1:22688913-22689069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               153, 27
               

               Conread position:
               157-338
               

               Cow position:
               chr1:81638234-81638412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               157-369
               

               Cow position:
               chr1:10519207-10519000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               157-397
               

               Cow position:
               chr1:42398365-42398124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               72, 138
               

               Conread position:
               157-439
               

               Cow position:
               chr1:57782841-57783112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               190, 63
               

               Conread position:
               157-448
               

               Cow position:
               chr1:22525712-22525997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 15
               

               Conread position:
               157-449
               

               Cow position:
               chr1:484634-484347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               157-505
               

               Cow position:
               chr1:2997775-2998126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               157-505
               

               Cow position:
               chr1:16061187-16060814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               157-506
               

               Cow position:
               chr1:541639-541970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 33
               

               Conread position:
               157-508
               

               Cow position:
               chr1:20667910-20667553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 66
               

               Conread position:
               157-508
               

               Cow position:
               chr1:38525418-38525786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               17, 127
               

               Conread position:
               157-508
               

               Cow position:
               chr1:49317665-49317304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               191, 137
               

               Conread position:
               157-508
               

               Cow position:
               chr1:59518752-59519108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 62
               

               Conread position:
               157-508
               

               Cow position:
               chr1:101632507-101632155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               191, 64
               

               Conread position:
               158-505
               

               Cow position:
               chr1:42545951-42545606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 28
               

               Conread position:
               159-309
               

               Cow position:
               chr1:32596287-32596440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 136
               

               Conread position:
               161-400
               

               Cow position:
               chr1:65905172-65904928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               161-447
               

               Cow position:
               chr1:42175560-42175845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               237, 58
               

               Conread position:
               161-480
               

               Cow position:
               chr1:75347456-75347775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 64
               

               Conread position:
               161-508
               

               Cow position:
               chr1:20544131-20544464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               195, 58
               

               Conread position:
               163-312
               

               Cow position:
               chr1:52449770-52449620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               80, 57
               

               Conread position:
               165-418
               

               Cow position:
               chr1:101946867-101946625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               180, 25
               

               Conread position:
               165-448
               

               Cow position:
               chr1:63530416-63530677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               180, 21
               

               Conread position:
               165-508
               

               Cow position:
               chr1:96472290-96472612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 27
               

               Conread position:
               168-448
               

               Cow position:
               chr1:87197670-87197939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               181, 51
               

               Conread position:
               170-508
               

               Cow position:
               chr1:64572358-64572711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               175, 49
               

               Conread position:
               171-395
               

               Cow position:
               chr1:6294651-6294433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               158, 9
               

               Conread position:
               172-352
               

               Cow position:
               chr1:85826193-85826369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               176, 14
               

               Conread position:
               172-361
               

               Cow position:
               chr1:51684650-51684838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               172-391
               

               Cow position:
               chr1:24445780-24445567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               173, 32
               

               Conread position:
               172-396
               

               Cow position:
               chr1:7609461-7609686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               19, 50
               

               Conread position:
               172-404
               

               Cow position:
               chr1:9470551-9470323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               176, 49
               

               Conread position:
               172-425
               

               Cow position:
               chr1:33409781-33409529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               57, 121
               

               Conread position:
               172-427
               

               Cow position:
               chr1:43703254-43703507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 48
               

               Conread position:
               172-432
               

               Cow position:
               chr1:41115868-41115616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               167, 48
               

               Conread position:
               172-448
               

               Cow position:
               chr1:96081331-96081598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               54, 82
               

               Conread position:
               172-449
               

               Cow position:
               chr1:44075861-44075599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               172-449
               

               Cow position:
               chr1:62519204-62519483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               121, 175
               

               Conread position:
               172-449
               

               Cow position:
               chr1:87095384-87095094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               172-449
               

               Cow position:
               chr1:88913164-88913439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               172-451
               

               Cow position:
               chr1:98413613-98413894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               53, 90
               

               Conread position:
               172-468
               

               Cow position:
               chr1:93554690-93554973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               176, 70
               

               Conread position:
               172-506
               

               Cow position:
               chr1:39025885-39026201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               121, 48
               

               Conread position:
               173-448
               

               Cow position:
               chr1:22192611-22192888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               144, 110
               

               Conread position:
               174-434
               

               Cow position:
               chr1:77683206-77683457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               174, 51
               

               Conread position:
               174-447
               

               Cow position:
               chr1:95557885-95558155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               174, 69
               

               Conread position:
               174-448
               

               Cow position:
               chr1:65909375-65909629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               224, 120
               

               Conread position:
               174-448
               

               Cow position:
               chr1:97696589-97696863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               57, 199
               

               Conread position:
               174-449
               

               Cow position:
               chr1:35554753-35555033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               134, 119
               

               Conread position:
               174-480
               

               Cow position:
               chr1:63314677-63314981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               174-508
               

               Cow position:
               chr1:18414602-18414292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               177, 21
               

               Conread position:
               174-508
               

               Cow position:
               chr1:46205666-46205987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               69, 46
               

               Conread position:
               175-433
               

               Cow position:
               chr1:31272591-31272338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               174, 44
               

               Conread position:
               175-434
               

               Cow position:
               chr1:70312955-70312686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               125, 45
               

               Conread position:
               175-449
               

               Cow position:
               chr1:89448750-89449020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               174, 11
               

               Conread position:
               176-434
               

               Cow position:
               chr1:14309185-14308928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               176-448
               

               Cow position:
               chr1:91811638-91811897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               40, 47
               

               Conread position:
               176-451
               

               Cow position:
               chr1:23512804-23512539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               172, 49
               

               Conread position:
               176-451
               

               Cow position:
               chr1:24778134-24777872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               173, 33
               

               Conread position:
               177-434
               

               Cow position:
               chr1:85647930-85647677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               172, 42
               

               Conread position:
               179-388
               

               Cow position:
               chr1:93228379-93228583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               179-415
               

               Cow position:
               chr1:38692517-38692752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               64, 41
               

               Conread position:
               179-508
               

               Cow position:
               chr1:39225071-39224742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 40
               

               Conread position:
               180-450
               

               Cow position:
               chr1:6228730-6228464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               168, 118
               

               Conread position:
               180-508
               

               Cow position:
               chr1:26531722-26531404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               169, 8
               

               Conread position:
               182-404
               

               Cow position:
               chr1:87440325-87440542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               167, 37
               

               Conread position:
               183-494
               

               Cow position:
               chr1:50045657-50045965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               60, 37
               

               Conread position:
               184-449
               

               Cow position:
               chr1:72813468-72813736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               10, 114
               

               Conread position:
               188-447
               

               Cow position:
               chr1:85550215-85549960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               160, 32
               

               Conread position:
               188-457
               

               Cow position:
               chr1:97090190-97090454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               161, 31
               

               Conread position:
               188-469
               

               Cow position:
               chr1:47886626-47886341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               41, 110
               

               Conread position:
               190-507
               

               Cow position:
               chr1:47790796-47790472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               158, 7
               

               Conread position:
               192-370
               

               Cow position:
               chr1:70389302-70389470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               153, 28
               

               Conread position:
               192-399
               

               Cow position:
               chr1:29451785-29451990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               37, 59
               

               Conread position:
               192-448
               

               Cow position:
               chr1:92997032-92996773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               17, 91
               

               Conread position:
               193-397
               

               Cow position:
               chr1:83410311-83410512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               131, 106
               

               Conread position:
               196-448
               

               Cow position:
               chr1:2976124-2975875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               196-506
               

               Cow position:
               chr1:44746736-44747036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               143, 24
               

               Conread position:
               197-449
               

               Cow position:
               chr1:79640418-79640168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               148, 21
               

               Conread position:
               197-485
               

               Cow position:
               chr1:72731910-72732196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               148, 22
               

               Conread position:
               198-408
               

               Cow position:
               chr1:5539404-5539197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               198-447
               

               Cow position:
               chr1:72105286-72105524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               199, 8
               

               Conread position:
               198-449
               

               Cow position:
               chr1:100569024-100569276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               31, 110
               

               Conread position:
               200-393
               

               Cow position:
               chr1:8984810-8984619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               149, 19
               

               Conread position:
               200-445
               

               Cow position:
               chr1:63038116-63038360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               75, 21
               

               Conread position:
               201-506
               

               Cow position:
               chr1:71666066-71665739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               15, 87
               

               Conread position:
               203-449
               

               Cow position:
               chr1:43311898-43311651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               119, 17
               

               Conread position:
               203-449
               

               Cow position:
               chr1:80422154-80422392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               203-508
               

               Cow position:
               chr1:3607688-3607992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               196, 22
               

               Conread position:
               204-449
               

               Cow position:
               chr1:78697893-78697652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               25, 41
               

               Conread position:
               206-376
               

               Cow position:
               chr1:15169451-15169287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               142, 14
               

               Conread position:
               206-448
               

               Cow position:
               chr1:7023000-7023240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               143, 65
               

               Conread position:
               206-449
               

               Cow position:
               chr1:8347002-8347243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               206-508
               

               Cow position:
               chr1:50634381-50634082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               10, 99
               

               Conread position:
               208-508
               

               Cow position:
               chr1:42541478-42541788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 89
               

               Conread position:
               209-448
               

               Cow position:
               chr1:6826405-6826180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               139, 11
               

               Conread position:
               210-449
               

               Cow position:
               chr1:42482087-42482317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               138, 80
               

               Conread position:
               211-449
               

               Cow position:
               chr1:98511813-98512046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               212-445
               

               Cow position:
               chr1:30189031-30189268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               213-443
               

               Cow position:
               chr1:61543031-61542805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               135, 86
               

               Conread position:
               214-508
               

               Cow position:
               chr1:60509568-60509287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               183, 98
               

               Conread position:
               216-449
               

               Cow position:
               chr1:92989479-92989710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               132, 75
               

               Conread position:
               219-450
               

               Cow position:
               chr1:6972422-6972647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               129, 77
               

               Conread position:
               219-508
               

               Cow position:
               chr1:96928923-96929207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               220-451
               

               Cow position:
               chr1:48769696-48769924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               220-502
               

               Cow position:
               chr1:26427968-26427689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 34
               

               Conread position:
               224-425
               

               Cow position:
               chr1:87936797-87936993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               124, 72
               

               Conread position:
               224-508
               

               Cow position:
               chr1:5637178-5636875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               224-508
               

               Cow position:
               chr1:43855199-43855486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               124, 72
               

               Conread position:
               226-505
               

               Cow position:
               chr1:59132313-59132041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               17, 54
               

               Conread position:
               227-449
               

               Cow position:
               chr1:22823806-22824025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               121, 22
               

               Conread position:
               227-449
               

               Cow position:
               chr1:95153120-95153342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               65, 85
               

               Conread position:
               227-477
               

               Cow position:
               chr1:75250013-75250258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               170, 26
               

               Conread position:
               227-506
               

               Cow position:
               chr1:24406993-24406719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               118, 71
               

               Conread position:
               229-430
               

               Cow position:
               chr1:82513453-82513252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               120, 75
               

               Conread position:
               235-449
               

               Cow position:
               chr1:186370-186161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 65
               

               Conread position:
               237-449
               

               Cow position:
               chr1:30418127-30417928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               160, 45
               

               Conread position:
               241-506
               

               Cow position:
               chr1:15028664-15028932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 74
               

               Conread position:
               242-416
               

               Cow position:
               chr1:72684612-72684779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               103, 52
               

               Conread position:
               242-451
               

               Cow position:
               chr1:50991850-50992056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               111, 40
               

               Conread position:
               242-472
               

               Cow position:
               chr1:48083640-48083870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               242-508
               

               Cow position:
               chr1:4788451-4788712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               107, 54
               

               Conread position:
               243-449
               

               Cow position:
               chr1:77892058-77892255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               10, 28
               

               Conread position:
               243-508
               

               Cow position:
               chr1:15902408-15902673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               244-449
               

               Cow position:
               chr1:70416839-70416640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               152, 17
               

               Conread position:
               244-449
               

               Cow position:
               chr1:100474148-100474354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               8, 53
               

               Conread position:
               244-473
               

               Cow position:
               chr1:96192745-96192517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               105, 42
               

               Conread position:
               247-449
               

               Cow position:
               chr1:68672679-68672482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               101, 47
               

               Conread position:
               248-448
               

               Cow position:
               chr1:37726499-37726300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               9, 52
               

               Conread position:
               248-462
               

               Cow position:
               chr1:5229042-5228833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               70, 20
               

               Conread position:
               249-434
               

               Cow position:
               chr1:4581410-4581225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               40, 52
               

               Conread position:
               249-473
               

               Cow position:
               chr1:56225710-56225929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               33, 48
               

               Conread position:
               249-503
               

               Cow position:
               chr1:102753775-102754043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               99, 56
               

               Conread position:
               250-448
               

               Cow position:
               chr1:48214238-48214039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               49, 127
               

               Conread position:
               250-449
               

               Cow position:
               chr1:65028455-65028652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               94, 43
               

               Conread position:
               250-449
               

               Cow position:
               chr1:98575969-98576167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               98, 49
               

               Conread position:
               250-508
               

               Cow position:
               chr1:43548134-43547872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               6, 99
               

               Conread position:
               252-508
               

               Cow position:
               chr1:10673856-10674128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               5, 14
               

               Conread position:
               253-434
               

               Cow position:
               chr1:68676288-68676464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               144, 55
               

               Conread position:
               254-506
               

               Cow position:
               chr1:54216943-54217192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               99, 52
               

               Conread position:
               255-434
               

               Cow position:
               chr1:30983562-30983391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               143, 40
               

               Conread position:
               256-448
               

               Cow position:
               chr1:46764803-46764994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 47
               

               Conread position:
               258-426
               

               Cow position:
               chr1:73936220-73936048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               44, 65
               

               Conread position:
               258-446
               

               Cow position:
               chr1:58036950-58037135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               90, 47
               

               Conread position:
               258-449
               

               Cow position:
               chr1:78068133-78067950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               90, 41
               

               Conread position:
               258-504
               

               Cow position:
               chr1:45223511-45223769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               90, 41
               

               Conread position:
               259-482
               

               Cow position:
               chr1:72807254-72807473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               165, 37
               

               Conread position:
               259-498
               

               Cow position:
               chr1:51565465-51565697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               132, 45
               

               Conread position:
               261-447
               

               Cow position:
               chr1:43312094-43311913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               87, 20
               

               Conread position:
               261-449
               

               Cow position:
               chr1:95072264-95072452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               79, 35
               

               Conread position:
               265-496
               

               Cow position:
               chr1:97962581-97962810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               84, 50
               

               Conread position:
               267-422
               

               Cow position:
               chr1:93577349-93577194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               82, 39
               

               Conread position:
               267-449
               

               Cow position:
               chr1:84768938-84768759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               82, 8
               

               Conread position:
               267-460
               

               Cow position:
               chr1:39121899-39121706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               82, 34
               

               Conread position:
               268-431
               

               Cow position:
               chr1:30504443-30504603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               80, 36
               

               Conread position:
               268-447
               

               Cow position:
               chr1:88359822-88359996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               80, 32
               

               Conread position:
               271-508
               

               Cow position:
               chr1:33998701-33998946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               80, 35
               

               Conread position:
               271-508
               

               Cow position:
               chr1:64218484-64218251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 24
               

               Conread position:
               272-449
               

               Cow position:
               chr1:77739661-77739841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               16, 158
               

               Conread position:
               273-434
               

               Cow position:
               chr1:69482005-69481843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               75, 22
               

               Conread position:
               274-508
               

               Cow position:
               chr1:92590142-92590370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               125, 32
               

               Conread position:
               275-448
               

               Cow position:
               chr1:95974343-95974519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               36, 26
               

               Conread position:
               281-482
               

               Cow position:
               chr1:59147392-59147192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               69, 25
               

               Conread position:
               287-451
               

               Cow position:
               chr1:8670732-8670896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               292-508
               

               Cow position:
               chr1:54289229-54289013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               292-508
               

               Cow position:
               chr1:97833673-97833894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               107, 52
               

               Conread position:
               297-499
               

               Cow position:
               chr1:12430294-12430103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               100, 6
               

               Conread position:
               299-447
               

               Cow position:
               chr1:101177483-101177633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               50, 104
               

               Conread position:
               302-508
               

               Cow position:
               chr1:81582084-81582292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               303-505
               

               Cow position:
               chr1:74082010-74081807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               16, 145
               

               Conread position:
               303-508
               

               Cow position:
               chr1:38205446-38205648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               46, 177
               

               Conread position:
               307-448
               

               Cow position:
               chr1:21823338-21823481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               307-505
               

               Cow position:
               chr1:5006138-5006338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               41, 74
               

               Conread position:
               307-508
               

               Cow position:
               chr1:23759757-23759962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               308-508
               

               Cow position:
               chr1:47402505-47402702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 105
               

               Conread position:
               309-434
               

               Cow position:
               chr1:13576908-13576775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               309-449
               

               Cow position:
               chr1:54157272-54157416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               309-449
               

               Cow position:
               chr1:98897716-98897574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               309-504
               

               Cow position:
               chr1:99071108-99071305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 128
               

               Conread position:
               309-508
               

               Cow position:
               chr1:46006227-46006031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               310-508
               

               Cow position:
               chr1:88338646-88338847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               39, 117
               

               Conread position:
               311-508
               

               Cow position:
               chr1:63078990-63079198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               312-485
               

               Cow position:
               chr1:62142503-62142328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               37, 108
               

               Conread position:
               315-452
               

               Cow position:
               chr1:242541-242680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               316-508
               

               Cow position:
               chr1:46821956-46822147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               83, 25
               

               Conread position:
               317-508
               

               Cow position:
               chr1:71782675-71782492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               16, 6
               

               Conread position:
               317-508
               

               Cow position:
               chr1:96346701-96346511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 6
               

               Conread position:
               319-449
               

               Cow position:
               chr1:45315648-45315516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               319-452
               

               Cow position:
               chr1:64019533-64019398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               320-449
               

               Cow position:
               chr1:61011170-61011301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               322-508
               

               Cow position:
               chr1:70416121-70416306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               24, 93
               

               Conread position:
               325-439
               

               Cow position:
               chr1:69941729-69941613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               325-508
               

               Cow position:
               chr1:6130738-6130562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               24, 40
               

               Conread position:
               329-508
               

               Cow position:
               chr1:95229333-95229152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               330-508
               

               Cow position:
               chr1:43499297-43499113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               18, 100
               

               Conread position:
               331-505
               

               Cow position:
               chr1:50261927-50261753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 122
               

               Conread position:
               331-506
               

               Cow position:
               chr1:80384763-80384587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               18, 94
               

               Conread position:
               331-508
               

               Cow position:
               chr1:45925040-45925219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 77
               

               Conread position:
               337-508
               

               Cow position:
               chr1:64706499-64706666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 114
               

               Conread position:
               347-504
               

               Cow position:
               chr1:4680366-4680518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               348-505
               

               Cow position:
               chr1:29337933-29338090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               352-504
               

               Cow position:
               chr1:33921258-33921106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               352-508
               

               Cow position:
               chr1:79663416-79663256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               352-508
               

               Cow position:
               chr1:91796205-91796045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 11
               

               Conread position:
               353-504
               

               Cow position:
               chr1:96043641-96043794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               46, 103
               

               Conread position:
               354-508
               

               Cow position:
               chr1:70044379-70044540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 18
               

               Conread position:
               355-508
               

               Cow position:
               chr1:48143540-48143684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               356-502
               

               Cow position:
               chr1:83926413-83926560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               357-508
               

               Cow position:
               chr1:64624800-64624651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               41, 94
               

               Conread position:
               361-508
               

               Cow position:
               chr1:44169684-44169831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               367-504
               

               Cow position:
               chr1:100366031-100365893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-448
Cow position:	chr1:42256836-42256383 (view UCSC Genome Browser custom track)
Alignm length:	459
Alignm identity:	303
Alignm E-value:	0
Alignm gaps (pig, cow):	108, 297
Conread position:	11-448
Cow position:	chr1:29916102-29916530 (view UCSC Genome Browser custom track)
Alignm length:	444
Alignm identity:	309
Alignm E-value:	0
Alignm gaps (pig, cow):	191, 97
Conread position:	11-506
Cow position:	chr1:95017827-95017365 (view UCSC Genome Browser custom track)
Alignm length:	499
Alignm identity:	344
Alignm E-value:	0
Alignm gaps (pig, cow):	224, 42
Conread position:	11-508
Cow position:	chr1:23041259-23041741 (view UCSC Genome Browser custom track)
Alignm length:	503
Alignm identity:	348
Alignm E-value:	0
Alignm gaps (pig, cow):	200, 102
Conread position:	12-508
Cow position:	chr1:97622517-97622042 (view UCSC Genome Browser custom track)
Alignm length:	505
Alignm identity:	356
Alignm E-value:	0
Alignm gaps (pig, cow):	67, 189
Conread position:	14-434
Cow position:	chr1:33331383-33330989 (view UCSC Genome Browser custom track)
Alignm length:	424
Alignm identity:	278
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	97, 47
Conread position:	15-401
Cow position:	chr1:72624802-72625188 (view UCSC Genome Browser custom track)
Alignm length:	395
Alignm identity:	250
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	102, 277
Conread position:	15-427
Cow position:	chr1:48444490-48444096 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	296
Alignm E-value:	0
Alignm gaps (pig, cow):	96, 46
Conread position:	15-434
Cow position:	chr1:63435115-63434701 (view UCSC Genome Browser custom track)
Alignm length:	426
Alignm identity:	297
Alignm E-value:	0
Alignm gaps (pig, cow):	161, 93
Conread position:	15-448
Cow position:	chr1:7739661-7740066 (view UCSC Genome Browser custom track)
Alignm length:	437
Alignm identity:	293
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	92, 41
Conread position:	15-449
Cow position:	chr1:42359945-42360408 (view UCSC Genome Browser custom track)
Alignm length:	465
Alignm identity:	322
Alignm E-value:	0
Alignm gaps (pig, cow):	44, 440
Conread position:	16-279
Cow position:	chr1:54732755-54732515 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	189
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	93, 38
Conread position:	16-284
Cow position:	chr1:26514662-26514392 (view UCSC Genome Browser custom track)
Alignm length:	271
Alignm identity:	171
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	94, 0
Conread position:	16-288
Cow position:	chr1:81859538-81859266 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	195
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	159, 88
Conread position:	16-297
Cow position:	chr1:15311557-15311840 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	204
Alignm E-value:	6.02558e-44
Alignm gaps (pig, cow):	93, 174
Conread position:	16-300
Cow position:	chr1:80869795-80870089 (view UCSC Genome Browser custom track)
Alignm length:	296
Alignm identity:	202
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	93, 214
Conread position:	16-301
Cow position:	chr1:83982687-83982395 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	204
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	94, 54
Conread position:	16-304
Cow position:	chr1:27495187-27495463 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	194
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	63, 20
Conread position:	16-313
Cow position:	chr1:76851042-76850740 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	216
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	14, 141
Conread position:	16-346
Cow position:	chr1:68782970-68782621 (view UCSC Genome Browser custom track)
Alignm length:	354
Alignm identity:	234
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	47, 109