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Cow genome map

           
Conread name:
           
rpigcf0_008845.y1
        

               
Conread position:
               
5-504
               

               
Cow position:
               
chr5:46611387-46610903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
6-508
               

               
Cow position:
               
chr5:44848314-44847809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
10-399
               

               
Cow position:
               
chr5:18557691-18557310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
108, 145
               

               
Conread position:
               
11-300
               

               
Cow position:
               
chr5:6986861-6987156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 220
               

               
Conread position:
               
11-432
               

               
Cow position:
               
chr5:25927983-25927572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
11-505
               

               
Cow position:
               
chr5:3442146-3442639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
48, 169
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr5:39710559-39710853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
12-403
               

               
Cow position:
               
chr5:72172739-72173120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
13-449
               

               
Cow position:
               
chr5:26094465-26094026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 239
               

               
Conread position:
               
15-300
               

               
Cow position:
               
chr5:42747869-42748150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
15-432
               

               
Cow position:
               
chr5:64524172-64523741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
15-445
               

               
Cow position:
               
chr5:21040266-21039847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
15-449
               

               
Cow position:
               
chr5:37190386-37189957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 46
               

               
Conread position:
               
15-450
               

               
Cow position:
               
chr5:12873455-12873892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
15-507
               

               
Cow position:
               
chr5:6528387-6528881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 231
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr5:20974738-20974461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
16-291
               

               
Cow position:
               
chr5:67462684-67462952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
190, 38
               

               
Conread position:
               
16-294
               

               
Cow position:
               
chr5:60519883-60520149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-300
               

               
Cow position:
               
chr5:44583407-44583135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
16-301
               

               
Cow position:
               
chr5:45705755-45706040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
93, 217
               

               
Conread position:
               
16-309
               

               
Cow position:
               
chr5:10248425-10248700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
16-311
               

               
Cow position:
               
chr5:64062060-64062361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
16-312
               

               
Cow position:
               
chr5:7921674-7921395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
16-312
               

               
Cow position:
               
chr5:30816423-30816722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 193
               

               
Conread position:
               
16-315
               

               
Cow position:
               
chr5:43329985-43329685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
16-323
               

               
Cow position:
               
chr5:14420637-14420328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 240
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chr5:20344877-20345194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 109
               

               
Conread position:
               
16-355
               

               
Cow position:
               
chr5:21944089-21944443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 291
               

               
Conread position:
               
16-362
               

               
Cow position:
               
chr5:20341598-20341252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 295
               

               
Conread position:
               
16-362
               

               
Cow position:
               
chr5:59065177-59065525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-363
               

               
Cow position:
               
chr5:3229030-3228681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-364
               

               
Cow position:
               
chr5:10261534-10261179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
16-367
               

               
Cow position:
               
chr5:29255481-29255128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 289
               

               
Conread position:
               
16-367
               

               
Cow position:
               
chr5:74161989-74161641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
16-369
               

               
Cow position:
               
chr5:54405186-54404831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr5:9867886-9868245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr5:14542743-14542386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 63
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr5:20971370-20971013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr5:37288917-37289268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr5:41067731-41068088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
16-376
               

               
Cow position:
               
chr5:6151122-6150761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 276
               

               
Conread position:
               
16-383
               

               
Cow position:
               
chr5:45940905-45940536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
16-395
               

               
Cow position:
               
chr5:31145074-31144702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
16-395
               

               
Cow position:
               
chr5:46122626-46122268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
146, 29
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr5:5938032-5938409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 205
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr5:23140870-23140502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
65, 176
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr5:41951373-41951009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr5:45999313-45998934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
158, 93
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr5:59877030-59876646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 295
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chr5:279448-279062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
63, 277
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chr5:34612506-34612890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 275
               

               
Conread position:
               
16-417
               

               
Cow position:
               
chr5:42845892-42845485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 171
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chr5:55756733-55756300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chr5:3204546-3204946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chr5:32697089-32696705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 54
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chr5:50637540-50637939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chr5:52645371-52644962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chr5:61839896-61840310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
16-430
               

               
Cow position:
               
chr5:38805636-38805224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 89
               

               
Conread position:
               
16-430
               

               
Cow position:
               
chr5:58793907-58793486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 184
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chr5:59216-58809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
96, 24
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chr5:15598525-15598113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chr5:16894061-16893646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
16-436
               

               
Cow position:
               
chr5:41609022-41609411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
16-440
               

               
Cow position:
               
chr5:19813512-19813088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
16-440
               

               
Cow position:
               
chr5:53841992-53842425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
16-443
               

               
Cow position:
               
chr5:44752604-44752173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 207
               

               
Conread position:
               
16-443
               

               
Cow position:
               
chr5:60715647-60715234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
16-443
               

               
Cow position:
               
chr5:65933221-65932809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
16-446
               

               
Cow position:
               
chr5:67932756-67932335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
16-447
               

               
Cow position:
               
chr5:34887490-34887057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 238
               

               
Conread position:
               
16-447
               

               
Cow position:
               
chr5:65887306-65886872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 284
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chr5:360237-359800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chr5:55068429-55068845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chr5:65752567-65752998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:29771226-29771668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 92
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:39936811-39937255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 347
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:47317260-47316834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:52165471-52165039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:54311031-54311476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chr5:65776684-65776244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
16-451
               

               
Cow position:
               
chr5:6044994-6045438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 210
               

               
Conread position:
               
16-451
               

               
Cow position:
               
chr5:29827761-29828188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 139
               

               
Conread position:
               
16-452
               

               
Cow position:
               
chr5:67212089-67212503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
16-455
               

               
Cow position:
               
chr5:16206434-16206009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
16-485
               

               
Cow position:
               
chr5:23535885-23536356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
16-499
               

               
Cow position:
               
chr5:26377956-26377471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-503
               

               
Cow position:
               
chr5:66815873-66815378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
16-504
               

               
Cow position:
               
chr5:37758096-37757651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 147
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chr5:28946345-28945864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chr5:30302606-30303097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 93
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chr5:41604318-41604820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 50
               

               
Conread position:
               
16-507
               

               
Cow position:
               
chr5:17027806-17028293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 92
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:24175079-24175569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 49
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:27103083-27102595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:27615212-27615711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:28927889-28927405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 212
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:30276403-30276905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 92
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:34442085-34441582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 176
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:43923441-43922953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 184
               

               
Conread position:
               
17-286
               

               
Cow position:
               
chr5:28330620-28330354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
17-295
               

               
Cow position:
               
chr5:4551841-4552134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
17-362
               

               
Cow position:
               
chr5:24485701-24485382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
331, 44
               

               
Conread position:
               
17-408
               

               
Cow position:
               
chr5:21524873-21525258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
92, 282
               

               
Conread position:
               
17-423
               

               
Cow position:
               
chr5:35209763-35209363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 93
               

               
Conread position:
               
17-433
               

               
Cow position:
               
chr5:68082251-68081849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
17-440
               

               
Cow position:
               
chr5:59303559-59303150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 140
               

               
Conread position:
               
17-447
               

               
Cow position:
               
chr5:26097006-26097427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 244
               

               
Conread position:
               
17-448
               

               
Cow position:
               
chr5:45226120-45225678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
17-449
               

               
Cow position:
               
chr5:21828565-21829007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 214
               

               
Conread position:
               
17-473
               

               
Cow position:
               
chr5:72564468-72564932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
17-506
               

               
Cow position:
               
chr5:56467413-56467886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 91
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr5:16184802-16185120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
18-425
               

               
Cow position:
               
chr5:31480863-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
87, 154
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chr5:15478818-15479265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 250
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chr5:39447825-39447392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 208
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chr5:44797005-44796593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
18-505
               

               
Cow position:
               
chr5:47871340-47870839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
18-508
               

               
Cow position:
               
chr5:40233847-40234310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
19-322
               

               
Cow position:
               
chr5:58460694-58460378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
19-432
               

               
Cow position:
               
chr5:24348827-24349229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
19-434
               

               
Cow position:
               
chr5:58855813-58856227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 204
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr5:2332812-2332541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 197
               

               
Conread position:
               
21-328
               

               
Cow position:
               
chr5:9083047-9083361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 285
               

               
Conread position:
               
21-403
               

               
Cow position:
               
chr5:65593590-65593962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
21-450
               

               
Cow position:
               
chr5:9090307-9089887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
21-506
               

               
Cow position:
               
chr5:58748481-58748964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr5:50950267-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
92, 200
               

               
Conread position:
               
22-397
               

               
Cow position:
               
chr5:64321464-64321841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
23-447
               

               
Cow position:
               
chr5:21617170-21617596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 201
               

               
Conread position:
               
25-449
               

               
Cow position:
               
chr5:53855421-53855846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
26-439
               

               
Cow position:
               
chr5:34183931-34184353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 283
               

               
Conread position:
               
26-449
               

               
Cow position:
               
chr5:42063920-42064345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
26-508
               

               
Cow position:
               
chr5:27420003-27419530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 156
               

               
Conread position:
               
27-343
               

               
Cow position:
               
chr5:6130075-6130386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
27-408
               

               
Cow position:
               
chr5:60952381-60952759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
27-505
               

               
Cow position:
               
chr5:14314241-14314731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 197
               

               
Conread position:
               
30-295
               

               
Cow position:
               
chr5:57327510-57327785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
30-452
               

               
Cow position:
               
chr5:26990114-26990531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 145
               

               
Conread position:
               
35-313
               

               
Cow position:
               
chr5:4507234-4506949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
74, 271
               

               
Conread position:
               
35-370
               

               
Cow position:
               
chr5:42096347-42096682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 197
               

               
Conread position:
               
35-449
               

               
Cow position:
               
chr5:63987720-63987306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
39-449
               

               
Cow position:
               
chr5:11229942-11229533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
41-508
               

               
Cow position:
               
chr5:328446-328004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr5:58229438-58229770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
46-423
               

               
Cow position:
               
chr5:22934718-22934342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 179
               

               
Conread position:
               
46-507
               

               
Cow position:
               
chr5:34049847-34050325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 258
               

               
Conread position:
               
47-402
               

               
Cow position:
               
chr5:34638624-34638976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 133
               

               
Conread position:
               
47-506
               

               
Cow position:
               
chr5:18276217-18276674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
50-305
               

               
Cow position:
               
chr5:56753470-56753728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr5:3491943-3492194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 121
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr5:65924959-65924634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
51-446
               

               
Cow position:
               
chr5:20779635-20779261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 15
               

               
Conread position:
               
51-496
               

               
Cow position:
               
chr5:26595360-26594912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
54-284
               

               
Cow position:
               
chr5:61656352-61656582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 179
               

               
Conread position:
               
54-401
               

               
Cow position:
               
chr5:50975633-50975993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
105, 172
               

               
Conread position:
               
57-448
               

               
Cow position:
               
chr5:61488362-61487973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
60-449
               

               
Cow position:
               
chr5:11668427-11668045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
61-443
               

               
Cow position:
               
chr5:62142423-62142810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 194
               

               
Conread position:
               
65-427
               

               
Cow position:
               
chr5:32956333-32955979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 64
               

               
Conread position:
               
65-448
               

               
Cow position:
               
chr5:17869472-17869824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
189, 42
               

               
Conread position:
               
66-359
               

               
Cow position:
               
chr5:34115420-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
66-363
               

               
Cow position:
               
chr5:18090483-18090791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
66-375
               

               
Cow position:
               
chr5:58144848-58144538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
24, 236
               

               
Conread position:
               
66-443
               

               
Cow position:
               
chr5:27306076-27306438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
66-447
               

               
Cow position:
               
chr5:26477235-26476880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
66-449
               

               
Cow position:
               
chr5:30253503-30253881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
66-452
               

               
Cow position:
               
chr5:43992083-43992467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
66-473
               

               
Cow position:
               
chr5:46323054-46322639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
43, 126
               

               
Conread position:
               
66-473
               

               
Cow position:
               
chr5:51502770-51503167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 162
               

               
Conread position:
               
67-506
               

               
Cow position:
               
chr5:25919855-25919439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 42
               

               
Conread position:
               
67-508
               

               
Cow position:
               
chr5:50900667-50901117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
260, 43
               

               
Conread position:
               
70-368
               

               
Cow position:
               
chr5:56433563-56433867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
70-377
               

               
Cow position:
               
chr5:2500419-2500112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
70-433
               

               
Cow position:
               
chr5:43738186-43737838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 22
               

               
Conread position:
               
70-449
               

               
Cow position:
               
chr5:30844874-30845248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
70-449
               

               
Cow position:
               
chr5:43929972-43929596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
70-449
               

               
Cow position:
               
chr5:49685519-49685137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 136
               

               
Conread position:
               
70-449
               

               
Cow position:
               
chr5:69337594-69337960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
104, 38
               

               
Conread position:
               
70-504
               

               
Cow position:
               
chr5:1344096-1343662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
70-507
               

               
Cow position:
               
chr5:75437135-75436695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 240
               

               
Conread position:
               
70-508
               

               
Cow position:
               
chr5:40109263-40109702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
71-356
               

               
Cow position:
               
chr5:37714142-37713848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
71-408
               

               
Cow position:
               
chr5:73079975-73080304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
71-432
               

               
Cow position:
               
chr5:34300688-34301039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
71-433
               

               
Cow position:
               
chr5:42744560-42744904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
274, 37
               

               
Conread position:
               
71-489
               

               
Cow position:
               
chr5:54350598-54350172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
71-505
               

               
Cow position:
               
chr5:30332706-30333146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
71-506
               

               
Cow position:
               
chr5:62172182-62172614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr5:1950298-1949859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr5:40711680-40711248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr5:40928210-40927796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr5:55088908-55089340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
72-434
               

               
Cow position:
               
chr5:17063330-17062957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
72-447
               

               
Cow position:
               
chr5:29353365-29352989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
73-380
               

               
Cow position:
               
chr5:34885391-34885093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
73-440
               

               
Cow position:
               
chr5:53835480-53835847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
73-449
               

               
Cow position:
               
chr5:55967118-55966743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
73-488
               

               
Cow position:
               
chr5:36854977-36855393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr5:41164853-41165300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
74-313
               

               
Cow position:
               
chr5:67655085-67655340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 74
               

               
Conread position:
               
74-338
               

               
Cow position:
               
chr5:56135203-56134937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 169
               

               
Conread position:
               
74-508
               

               
Cow position:
               
chr5:72007087-72006664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
75-338
               

               
Cow position:
               
chr5:1276708-1276436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 239
               

               
Conread position:
               
75-466
               

               
Cow position:
               
chr5:34232510-34232908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 149
               

               
Conread position:
               
76-288
               

               
Cow position:
               
chr5:33467273-33467061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
76-508
               

               
Cow position:
               
chr5:7723440-7723862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
77-346
               

               
Cow position:
               
chr5:66831945-66831675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
77-364
               

               
Cow position:
               
chr5:12709655-12709943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 146
               

               
Conread position:
               
77-399
               

               
Cow position:
               
chr5:20127823-20128141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
77-408
               

               
Cow position:
               
chr5:64137020-64137355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 226
               

               
Conread position:
               
77-448
               

               
Cow position:
               
chr5:24996455-24996084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
97, 80
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chr5:4032220-4031846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chr5:16938239-16937889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
77-508
               

               
Cow position:
               
chr5:40388097-40387683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
78-394
               

               
Cow position:
               
chr5:40357100-40356762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
78-449
               

               
Cow position:
               
chr5:36868515-36868875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
78-507
               

               
Cow position:
               
chr5:3771616-3772059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
78-508
               

               
Cow position:
               
chr5:39695426-39695850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
79-431
               

               
Cow position:
               
chr5:65588483-65588821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 30
               

               
Conread position:
               
79-448
               

               
Cow position:
               
chr5:56070624-56070998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 145
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chr5:37646781-37646404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chr5:54086311-54086678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chr5:72903453-72903096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
143, 29
               

               
Conread position:
               
80-508
               

               
Cow position:
               
chr5:71454824-71454413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
81-322
               

               
Cow position:
               
chr5:51490981-51490745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
81-404
               

               
Cow position:
               
chr5:56820487-56820171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
81-508
               

               
Cow position:
               
chr5:41598925-41598513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
83-447
               

               
Cow position:
               
chr5:5257522-5257151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
83-449
               

               
Cow position:
               
chr5:25495563-25495218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
84-485
               

               
Cow position:
               
chr5:27411614-27411225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr5:35969321-35969672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 140
               

               
Conread position:
               
88-506
               

               
Cow position:
               
chr5:39442072-39442493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
89-508
               

               
Cow position:
               
chr5:2309784-2309340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 196
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr5:45036804-45037014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
90-416
               

               
Cow position:
               
chr5:12803277-12803617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
91-316
               

               
Cow position:
               
chr5:57271483-57271256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
91-360
               

               
Cow position:
               
chr5:7140318-7140056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
92-508
               

               
Cow position:
               
chr5:26262890-26262467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
92-508
               

               
Cow position:
               
chr5:58320678-58320272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
93-426
               

               
Cow position:
               
chr5:11427454-11427118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
93-440
               

               
Cow position:
               
chr5:64758974-64758636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr5:48154685-48154380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
96-456
               

               
Cow position:
               
chr5:1688321-1687968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
96-481
               

               
Cow position:
               
chr5:57736906-57737273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
249, 12
               

               
Conread position:
               
98-307
               

               
Cow position:
               
chr5:62027153-62026946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
98-367
               

               
Cow position:
               
chr5:35235918-35235652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chr5:71494606-71494961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 171
               

               
Conread position:
               
98-508
               

               
Cow position:
               
chr5:18898773-18899174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
98-508
               

               
Cow position:
               
chr5:40039979-40039571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
99-448
               

               
Cow position:
               
chr5:22643424-22643093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
100-508
               

               
Cow position:
               
chr5:4280255-4280662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr5:8994762-8994530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
110-427
               

               
Cow position:
               
chr5:9390339-9390675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
110-427
               

               
Cow position:
               
chr5:56518406-56518104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
235, 110
               

               
Conread position:
               
110-449
               

               
Cow position:
               
chr5:458285-458628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 201
               

               
Conread position:
               
112-448
               

               
Cow position:
               
chr5:6896321-6895988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
112-508
               

               
Cow position:
               
chr5:29756143-29756535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 112
               

               
Conread position:
               
113-363
               

               
Cow position:
               
chr5:1027885-1027641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chr5:32282137-32282463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 111
               

               
Conread position:
               
116-449
               

               
Cow position:
               
chr5:17371891-17371560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
177, 16
               

               
Conread position:
               
116-451
               

               
Cow position:
               
chr5:4220790-4221119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
117-335
               

               
Cow position:
               
chr5:53146075-53145859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 6
               

               
Conread position:
               
117-408
               

               
Cow position:
               
chr5:52040509-52040224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
118-434
               

               
Cow position:
               
chr5:7044899-7044580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
119-435
               

               
Cow position:
               
chr5:31561348-31561661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
120-338
               

               
Cow position:
               
chr5:17644842-17644627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
122-419
               

               
Cow position:
               
chr5:36486301-36486603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 199
               

               
Conread position:
               
123-449
               

               
Cow position:
               
chr5:37808848-37808523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
123-508
               

               
Cow position:
               
chr5:34624785-34625166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
124-425
               

               
Cow position:
               
chr5:55928760-55929060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 97
               

               
Conread position:
               
125-432
               

               
Cow position:
               
chr5:54111737-54112036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
125-486
               

               
Cow position:
               
chr5:54089856-54090214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
126-405
               

               
Cow position:
               
chr5:34167780-34168056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
127-481
               

               
Cow position:
               
chr5:31923202-31923545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 53
               

               
Conread position:
               
129-498
               

               
Cow position:
               
chr5:7552596-7552232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
131-388
               

               
Cow position:
               
chr5:29980161-29979904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
131-423
               

               
Cow position:
               
chr5:59115205-59115496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
132-397
               

               
Cow position:
               
chr5:19778758-19778486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 246
               

               
Conread position:
               
132-443
               

               
Cow position:
               
chr5:51935008-51935323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
41, 173
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr5:62638731-62639103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
136-508
               

               
Cow position:
               
chr5:55955735-55956128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
140-447
               

               
Cow position:
               
chr5:30950086-30949777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
141-415
               

               
Cow position:
               
chr5:33265613-33265362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr5:16214525-16214826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 60
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr5:54060111-54060415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
145-505
               

               
Cow position:
               
chr5:41452823-41452476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
203, 16
               

               
Conread position:
               
145-508
               

               
Cow position:
               
chr5:23529438-23529084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
149-508
               

               
Cow position:
               
chr5:37068734-37069080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
150-449
               

               
Cow position:
               
chr5:56317143-56317429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
249, 11
               

               
Conread position:
               
156-508
               

               
Cow position:
               
chr5:29844133-29844479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
157-303
               

               
Cow position:
               
chr5:71579024-71579171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
157-426
               

               
Cow position:
               
chr5:66581814-66582081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
159-365
               

               
Cow position:
               
chr5:51801117-51800917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 26
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chr5:14629959-14629666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr5:66972282-66972568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
187, 135
               

               
Conread position:
               
161-455
               

               
Cow position:
               
chr5:29097214-29097513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 136
               

               
Conread position:
               
161-508
               

               
Cow position:
               
chr5:38629144-38629485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
161-508
               

               
Cow position:
               
chr5:48405319-48404997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
184, 29
               

               
Conread position:
               
163-503
               

               
Cow position:
               
chr5:73556329-73556007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
164-499
               

               
Cow position:
               
chr5:19294628-19294310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
225, 35
               

               
Conread position:
               
165-442
               

               
Cow position:
               
chr5:7755703-7755436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
184, 54
               

               
Conread position:
               
165-449
               

               
Cow position:
               
chr5:45574480-45574760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
168-449
               

               
Cow position:
               
chr5:14473553-14473263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
169-449
               

               
Cow position:
               
chr5:18288992-18289262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
227, 135
               

               
Conread position:
               
171-392
               

               
Cow position:
               
chr5:991331-991546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
171-432
               

               
Cow position:
               
chr5:7057542-7057280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
172-412
               

               
Cow position:
               
chr5:36255394-36255154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
172-507
               

               
Cow position:
               
chr5:39874989-39875322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chr5:47696573-47696242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 14
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chr5:72951705-72952042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
173-391
               

               
Cow position:
               
chr5:25447431-25447645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
174-450
               

               
Cow position:
               
chr5:45273633-45273361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
174, 117
               

               
Conread position:
               
174-497
               

               
Cow position:
               
chr5:41713175-41713495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 12
               

               
Conread position:
               
175-434
               

               
Cow position:
               
chr5:33560865-33560610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
173, 118
               

               
Conread position:
               
175-449
               

               
Cow position:
               
chr5:63427137-63426865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr5:47721408-47721580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
179-451
               

               
Cow position:
               
chr5:60747403-60747139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
183-506
               

               
Cow position:
               
chr5:16179650-16179307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
186-447
               

               
Cow position:
               
chr5:58446685-58446945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
190-397
               

               
Cow position:
               
chr5:19523781-19523987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
190-449
               

               
Cow position:
               
chr5:53710810-53710549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 104
               

               
Conread position:
               
190-473
               

               
Cow position:
               
chr5:6891134-6890859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
207, 29
               

               
Conread position:
               
191-359
               

               
Cow position:
               
chr5:60448100-60448265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 111
               

               
Conread position:
               
191-449
               

               
Cow position:
               
chr5:38076598-38076343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
191-451
               

               
Cow position:
               
chr5:3639607-3639355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
192-427
               

               
Cow position:
               
chr5:12901801-12902035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 135
               

               
Conread position:
               
192-448
               

               
Cow position:
               
chr5:57768097-57767848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
192-452
               

               
Cow position:
               
chr5:49440986-49440733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
192-508
               

               
Cow position:
               
chr5:49474659-49474336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
193-397
               

               
Cow position:
               
chr5:57561404-57561610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
193-451
               

               
Cow position:
               
chr5:13717684-13717429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
196-449
               

               
Cow position:
               
chr5:7697895-7698140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
153, 23
               

               
Conread position:
               
196-449
               

               
Cow position:
               
chr5:57419903-57419654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
196-452
               

               
Cow position:
               
chr5:23678814-23678560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
197-434
               

               
Cow position:
               
chr5:14921039-14920805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
152, 22
               

               
Conread position:
               
197-449
               

               
Cow position:
               
chr5:35125945-35126195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr5:4927675-4927416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
198-508
               

               
Cow position:
               
chr5:12434427-12434753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
199-427
               

               
Cow position:
               
chr5:56635793-56636013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 71
               

               
Conread position:
               
199-442
               

               
Cow position:
               
chr5:21535221-21534978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
199-485
               

               
Cow position:
               
chr5:18553793-18554068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
146, 6
               

               
Conread position:
               
200-475
               

               
Cow position:
               
chr5:41293974-41294244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 94
               

               
Conread position:
               
201-434
               

               
Cow position:
               
chr5:53946790-53947022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
202-408
               

               
Cow position:
               
chr5:34192794-34193005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
203-508
               

               
Cow position:
               
chr5:35785079-35784788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
145, 34
               

               
Conread position:
               
208-505
               

               
Cow position:
               
chr5:47836444-47836745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
210-504
               

               
Cow position:
               
chr5:28035642-28035938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
213-507
               

               
Cow position:
               
chr5:41945759-41946044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
214-505
               

               
Cow position:
               
chr5:50575692-50575984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
220-440
               

               
Cow position:
               
chr5:61914483-61914696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 73
               

               
Conread position:
               
220-508
               

               
Cow position:
               
chr5:18695091-18695354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
224-426
               

               
Cow position:
               
chr5:57527001-57526812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
224-449
               

               
Cow position:
               
chr5:47323382-47323602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
175, 80
               

               
Conread position:
               
224-464
               

               
Cow position:
               
chr5:59873174-59872926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 236
               

               
Conread position:
               
224-485
               

               
Cow position:
               
chr5:42782800-42782548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
227-448
               

               
Cow position:
               
chr5:43402820-43403042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 204
               

               
Conread position:
               
229-448
               

               
Cow position:
               
chr5:29515576-29515366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
237-508
               

               
Cow position:
               
chr5:38738729-38738981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 57
               

               
Conread position:
               
242-504
               

               
Cow position:
               
chr5:17267959-17267699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
107, 81
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr5:63234890-63234691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
156, 56
               

               
Conread position:
               
243-448
               

               
Cow position:
               
chr5:20843464-20843255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
243-451
               

               
Cow position:
               
chr5:55796029-55795824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
243-506
               

               
Cow position:
               
chr5:1461023-1461269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
244-503
               

               
Cow position:
               
chr5:66189924-66190178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
245-466
               

               
Cow position:
               
chr5:27502885-27503090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
246-449
               

               
Cow position:
               
chr5:45420195-45419997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
247-507
               

               
Cow position:
               
chr5:63831867-63832133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr5:15482977-15483234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr5:57156367-57156195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr5:34279650-34279445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
262-451
               

               
Cow position:
               
chr5:49501870-49501682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr5:56153569-56153817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
264-464
               

               
Cow position:
               
chr5:18062378-18062164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
266-504
               

               
Cow position:
               
chr5:38717277-38717509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
266-506
               

               
Cow position:
               
chr5:45396452-45396216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
266-508
               

               
Cow position:
               
chr5:40237172-40237406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
268-449
               

               
Cow position:
               
chr5:57101565-57101384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
268-508
               

               
Cow position:
               
chr5:48178426-48178183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
272-508
               

               
Cow position:
               
chr5:34914590-34914358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr5:21195147-21194924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
155, 49
               

               
Conread position:
               
276-432
               

               
Cow position:
               
chr5:45574399-45574242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
281-440
               

               
Cow position:
               
chr5:61875516-61875668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
281-447
               

               
Cow position:
               
chr5:57230366-57230200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
285-427
               

               
Cow position:
               
chr5:62415986-62415843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
285-449
               

               
Cow position:
               
chr5:58555112-58555277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
291-508
               

               
Cow position:
               
chr5:23527652-23527431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
302-506
               

               
Cow position:
               
chr5:58343850-58344055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
304-508
               

               
Cow position:
               
chr5:21531111-21530911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
304-508
               

               
Cow position:
               
chr5:65197688-65197492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
306-449
               

               
Cow position:
               
chr5:59627095-59627240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
307-447
               

               
Cow position:
               
chr5:9369274-9369133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
308-449
               

               
Cow position:
               
chr5:55129340-55129483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr5:44163369-44163228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
311-508
               

               
Cow position:
               
chr5:4267670-4267878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 162
               

               
Conread position:
               
313-505
               

               
Cow position:
               
chr5:1349789-1349598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
316-505
               

               
Cow position:
               
chr5:42316903-42316719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
321-434
               

               
Cow position:
               
chr5:3743332-3743447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
330-508
               

               
Cow position:
               
chr5:75228180-75227995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
332-472
               

               
Cow position:
               
chr5:61365553-61365694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
333-508
               

               
Cow position:
               
chr5:53145730-53145549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 153
               

               
Conread position:
               
346-508
               

               
Cow position:
               
chr5:30638543-30638386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
348-507
               

               
Cow position:
               
chr5:42049723-42049877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
367-508
               

               
Cow position:
               
chr5:39134203-39134061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
379-508
               

               
Cow position:
               
chr5:61647259-61647129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
387-508
               

               
Cow position:
               
chr5:13890545-13890668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               
Show alignments to all cow chromosomes.