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Cow genome map

           
Conread name:
           
rpigcf0_008845.y1
        

               
Conread position:
               
1-448
               

               
Cow position:
               
chrX:25035692-25035242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
5-399
               

               
Cow position:
               
chrX:21833583-21833979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
112, 293
               

               
Conread position:
               
11-433
               

               
Cow position:
               
chrX:28111199-28111634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 222
               

               
Conread position:
               
11-447
               

               
Cow position:
               
chrX:30162701-30163144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 209
               

               
Conread position:
               
11-457
               

               
Cow position:
               
chrX:34238425-34238870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 212
               

               
Conread position:
               
12-448
               

               
Cow position:
               
chrX:11561848-11562286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
34, 223
               

               
Conread position:
               
13-447
               

               
Cow position:
               
chrX:5872022-5872456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
15-320
               

               
Cow position:
               
chrX:35609694-35610002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 289
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chrX:40827039-40826663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
101, 94
               

               
Conread position:
               
15-434
               

               
Cow position:
               
chrX:40481164-40480741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
15-448
               

               
Cow position:
               
chrX:45430310-45429882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 208
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chrX:6372890-6373158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chrX:2104114-2104384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
16-286
               

               
Cow position:
               
chrX:38967361-38967628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
16-295
               

               
Cow position:
               
chrX:40452504-40452220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 215
               

               
Conread position:
               
16-297
               

               
Cow position:
               
chrX:12115750-12116037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
16-304
               

               
Cow position:
               
chrX:35041931-35042224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
16-305
               

               
Cow position:
               
chrX:28847167-28846883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
16-310
               

               
Cow position:
               
chrX:30199283-30198983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
16-312
               

               
Cow position:
               
chrX:14846365-14846064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 250
               

               
Conread position:
               
16-312
               

               
Cow position:
               
chrX:16466009-16466311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 290
               

               
Conread position:
               
16-324
               

               
Cow position:
               
chrX:36692944-36693256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
93, 223
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chrX:17271580-17271248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 210
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chrX:38439182-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 210
               

               
Conread position:
               
16-346
               

               
Cow position:
               
chrX:47379758-47379431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
93, 102
               

               
Conread position:
               
16-349
               

               
Cow position:
               
chrX:3653472-3653800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 191
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chrX:35681044-35681393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 146
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chrX:48247124-48246795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
16-362
               

               
Cow position:
               
chrX:37958206-37958554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 294
               

               
Conread position:
               
16-362
               

               
Cow position:
               
chrX:48243743-48243413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
83, 144
               

               
Conread position:
               
16-363
               

               
Cow position:
               
chrX:9085624-9085276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 266
               

               
Conread position:
               
16-364
               

               
Cow position:
               
chrX:28845553-28845888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 137
               

               
Conread position:
               
16-367
               

               
Cow position:
               
chrX:8434498-8434145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
16-369
               

               
Cow position:
               
chrX:7718565-7718909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
16-369
               

               
Cow position:
               
chrX:19188645-19188991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 180
               

               
Conread position:
               
16-369
               

               
Cow position:
               
chrX:21592995-21593347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-372
               

               
Cow position:
               
chrX:13785669-13785297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:4343458-4343817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:7444793-7445151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:11145629-11145270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:15577932-15577573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:19196809-19196450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:24969107-24968748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:25232295-25232657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 210
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:29841460-29841103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chrX:37816297-37816656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 289
               

               
Conread position:
               
16-376
               

               
Cow position:
               
chrX:46297369-46297731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 250
               

               
Conread position:
               
16-379
               

               
Cow position:
               
chrX:41743622-41743984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 164
               

               
Conread position:
               
16-394
               

               
Cow position:
               
chrX:42507935-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chrX:23299663-23300046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 318
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chrX:31949222-31948847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 158
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chrX:34663150-34662758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
16-398
               

               
Cow position:
               
chrX:12145804-12146187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
16-398
               

               
Cow position:
               
chrX:29356296-29356680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chrX:4905280-4904897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
101, 189
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chrX:20709784-20710164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chrX:23264728-23264343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chrX:26754920-26754552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chrX:32584104-32583719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 293
               

               
Conread position:
               
16-408
               

               
Cow position:
               
chrX:15485916-15485534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-423
               

               
Cow position:
               
chrX:38936408-38936815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 206
               

               
Conread position:
               
16-425
               

               
Cow position:
               
chrX:11844529-11844124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 45
               

               
Conread position:
               
16-425
               

               
Cow position:
               
chrX:23564088-23563674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 283
               

               
Conread position:
               
16-425
               

               
Cow position:
               
chrX:26625976-26625554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 220
               

               
Conread position:
               
16-426
               

               
Cow position:
               
chrX:30133615-30133200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
16-427
               

               
Cow position:
               
chrX:11082905-11082503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 206
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chrX:28134058-28134464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chrX:34532240-34532646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 78
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chrX:40557967-40557553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 139
               

               
Conread position:
               
16-439
               

               
Cow position:
               
chrX:3154540-3154111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 210
               

               
Conread position:
               
16-440
               

               
Cow position:
               
chrX:7277637-7278043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
16-440
               

               
Cow position:
               
chrX:26492711-26493138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 328
               

               
Conread position:
               
16-441
               

               
Cow position:
               
chrX:9161297-9161708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 151
               

               
Conread position:
               
16-441
               

               
Cow position:
               
chrX:34401707-34402129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
16-443
               

               
Cow position:
               
chrX:10412277-10411849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 93
               

               
Conread position:
               
16-443
               

               
Cow position:
               
chrX:42171587-42171162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
16-447
               

               
Cow position:
               
chrX:15545606-15546021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 93
               

               
Conread position:
               
16-447
               

               
Cow position:
               
chrX:38094816-38094381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:5017697-5017282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:25419451-25419014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:33466326-33466764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 78
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:34502632-34503060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:34565009-34565423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 37
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:35288369-35288795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:41790731-41790289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:45113345-45113761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:151610-152041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 133
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:4044149-4043726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 181
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:7178621-7179035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:10831803-10831347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 223
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:11655788-11656222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 218
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:11718071-11717642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 97
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:14599242-14599673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:20340182-20339753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 198
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:20887935-20887499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 132
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:27442843-27442398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:27705302-27705727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 93
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:31250100-31250529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:31489221-31489661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 273
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:31729167-31729583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
106, 97
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:38218427-38218857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 38
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:41238654-41238214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 94
               

               
Conread position:
               
16-449
               

               
Cow position:
               
chrX:42247467-42247041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
16-450
               

               
Cow position:
               
chrX:37489427-37489860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 170
               

               
Conread position:
               
16-450
               

               
Cow position:
               
chrX:45967871-45968290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
89, 157
               

               
Conread position:
               
16-451
               

               
Cow position:
               
chrX:7351011-7351440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
16-451
               

               
Cow position:
               
chrX:15147475-15147053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
16-461
               

               
Cow position:
               
chrX:32743247-32743685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 171
               

               
Conread position:
               
16-465
               

               
Cow position:
               
chrX:12290446-12290877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
16-493
               

               
Cow position:
               
chrX:630587-630123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 25
               

               
Conread position:
               
16-496
               

               
Cow position:
               
chrX:2300640-2301113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 157
               

               
Conread position:
               
16-503
               

               
Cow position:
               
chrX:28929570-28930030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
16-504
               

               
Cow position:
               
chrX:1616342-1615842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 213
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chrX:15007442-15006941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 149
               

               
Conread position:
               
16-506
               

               
Cow position:
               
chrX:20376679-20377161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:917660-917179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:5638459-5637959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:7645967-7646456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:17964806-17964326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:31260922-31260405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 216
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:31436189-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 157
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:32309810-32310302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 219
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:36010183-36009716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:41122781-41123265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 146
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:41733478-41733003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chrX:42994323-42994816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 140
               

               
Conread position:
               
17-373
               

               
Cow position:
               
chrX:20321057-20320700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
17-373
               

               
Cow position:
               
chrX:21686330-21686682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
17-432
               

               
Cow position:
               
chrX:9252464-9252039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
17-449
               

               
Cow position:
               
chrX:161138-161552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 92
               

               
Conread position:
               
17-449
               

               
Cow position:
               
chrX:27446401-27446827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
17-449
               

               
Cow position:
               
chrX:29289286-29289719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 227
               

               
Conread position:
               
17-491
               

               
Cow position:
               
chrX:20801488-20801946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
17-505
               

               
Cow position:
               
chrX:14974018-14973540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
17-505
               

               
Cow position:
               
chrX:27288032-27287542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
17-506
               

               
Cow position:
               
chrX:25337887-25338382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 211
               

               
Conread position:
               
17-508
               

               
Cow position:
               
chrX:13912789-13913295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 166
               

               
Conread position:
               
17-508
               

               
Cow position:
               
chrX:30543572-30543088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 77
               

               
Conread position:
               
18-284
               

               
Cow position:
               
chrX:23986956-23987227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
18-397
               

               
Cow position:
               
chrX:14598556-14598937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 274
               

               
Conread position:
               
18-399
               

               
Cow position:
               
chrX:21063997-21064374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 138
               

               
Conread position:
               
18-423
               

               
Cow position:
               
chrX:11314067-11313670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 90
               

               
Conread position:
               
18-432
               

               
Cow position:
               
chrX:27516244-27516642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
18-434
               

               
Cow position:
               
chrX:7571617-7572032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
18-434
               

               
Cow position:
               
chrX:24288202-24287807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
181, 49
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chrX:34441736-34441313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chrX:43527214-43527649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 289
               

               
Conread position:
               
18-449
               

               
Cow position:
               
chrX:44054516-44054943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chrX:1978207-1978661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
59, 230
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chrX:2786835-2786396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
18-508
               

               
Cow position:
               
chrX:15329364-15329842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 85
               

               
Conread position:
               
19-449
               

               
Cow position:
               
chrX:44192730-44192303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
19-470
               

               
Cow position:
               
chrX:28787079-28787508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 46
               

               
Conread position:
               
19-508
               

               
Cow position:
               
chrX:33803304-33802808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
20-432
               

               
Cow position:
               
chrX:46532807-46532372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 432
               

               
Conread position:
               
20-449
               

               
Cow position:
               
chrX:8796963-8797390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
21-306
               

               
Cow position:
               
chrX:45412938-45412658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
21-405
               

               
Cow position:
               
chrX:46033004-46032630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
166, 87
               

               
Conread position:
               
21-448
               

               
Cow position:
               
chrX:31294826-31294432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
22-412
               

               
Cow position:
               
chrX:1055673-1055277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 153
               

               
Conread position:
               
23-391
               

               
Cow position:
               
chrX:158053-157690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
24-397
               

               
Cow position:
               
chrX:2467597-2467972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
26-345
               

               
Cow position:
               
chrX:28097844-28098152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
26-426
               

               
Cow position:
               
chrX:34554449-34554841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 143
               

               
Conread position:
               
26-449
               

               
Cow position:
               
chrX:8730798-8731234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 307
               

               
Conread position:
               
27-449
               

               
Cow position:
               
chrX:33855521-33855079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 202
               

               
Conread position:
               
27-504
               

               
Cow position:
               
chrX:16762492-16762984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
27-508
               

               
Cow position:
               
chrX:31443101-31442619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 223
               

               
Conread position:
               
30-370
               

               
Cow position:
               
chrX:12017998-12018353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
79, 135
               

               
Conread position:
               
30-449
               

               
Cow position:
               
chrX:33639688-33640116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 305
               

               
Conread position:
               
30-506
               

               
Cow position:
               
chrX:6675202-6674717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
30-507
               

               
Cow position:
               
chrX:8925429-8925899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
32-359
               

               
Cow position:
               
chrX:47191670-47191357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
33-294
               

               
Cow position:
               
chrX:45693832-45694090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 159
               

               
Conread position:
               
34-325
               

               
Cow position:
               
chrX:40183623-40183322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
34-350
               

               
Cow position:
               
chrX:40647705-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 196
               

               
Conread position:
               
34-462
               

               
Cow position:
               
chrX:7496972-7497391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
36-343
               

               
Cow position:
               
chrX:10095755-10096065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 199
               

               
Conread position:
               
36-448
               

               
Cow position:
               
chrX:27509292-27508886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 189
               

               
Conread position:
               
37-425
               

               
Cow position:
               
chrX:45404104-45403708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 270
               

               
Conread position:
               
37-505
               

               
Cow position:
               
chrX:17541694-17542158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 158
               

               
Conread position:
               
46-432
               

               
Cow position:
               
chrX:19689957-19690338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 184
               

               
Conread position:
               
48-507
               

               
Cow position:
               
chrX:20151591-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
48-508
               

               
Cow position:
               
chrX:25713542-25713995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
49-297
               

               
Cow position:
               
chrX:32020380-32020129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
60, 246
               

               
Conread position:
               
50-243
               

               
Cow position:
               
chrX:46382033-46381839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
52-489
               

               
Cow position:
               
chrX:27176575-27176133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
54-434
               

               
Cow position:
               
chrX:41673850-41674231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
54-449
               

               
Cow position:
               
chrX:28878415-28878033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
54-471
               

               
Cow position:
               
chrX:24366082-24365660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
54-508
               

               
Cow position:
               
chrX:11073444-11072999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chrX:23497915-23497477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 135
               

               
Conread position:
               
60-440
               

               
Cow position:
               
chrX:9041475-9041112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
60-442
               

               
Cow position:
               
chrX:27432166-27431784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 166
               

               
Conread position:
               
64-323
               

               
Cow position:
               
chrX:35284374-35284638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
64-419
               

               
Cow position:
               
chrX:13323243-13322876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
65-337
               

               
Cow position:
               
chrX:2648592-2648323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
65-408
               

               
Cow position:
               
chrX:16541915-16541557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
65-508
               

               
Cow position:
               
chrX:10302094-10302537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
65-508
               

               
Cow position:
               
chrX:41083683-41084116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
66-301
               

               
Cow position:
               
chrX:21663068-21663300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
66-308
               

               
Cow position:
               
chrX:38840647-38840891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
66-363
               

               
Cow position:
               
chrX:30862061-30862370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 248
               

               
Conread position:
               
66-472
               

               
Cow position:
               
chrX:24259819-24259418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 42
               

               
Conread position:
               
66-504
               

               
Cow position:
               
chrX:29761923-29761488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
66-508
               

               
Cow position:
               
chrX:40788962-40789403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 162
               

               
Conread position:
               
67-426
               

               
Cow position:
               
chrX:42492750-42492405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 27
               

               
Conread position:
               
67-449
               

               
Cow position:
               
chrX:17888646-17888282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
67-469
               

               
Cow position:
               
chrX:2383249-2383624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
67-506
               

               
Cow position:
               
chrX:17662837-17662403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 159
               

               
Conread position:
               
67-506
               

               
Cow position:
               
chrX:41560474-41560078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:42282199-42282424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
70-307
               

               
Cow position:
               
chrX:19019347-19019105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
70-338
               

               
Cow position:
               
chrX:44053021-44053288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
70-369
               

               
Cow position:
               
chrX:41167201-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 225
               

               
Conread position:
               
70-378
               

               
Cow position:
               
chrX:26876118-26875812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 149
               

               
Conread position:
               
70-393
               

               
Cow position:
               
chrX:9360646-9360971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 191
               

               
Conread position:
               
70-413
               

               
Cow position:
               
chrX:27680166-27680503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 102
               

               
Conread position:
               
70-434
               

               
Cow position:
               
chrX:43567702-43568045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
70-447
               

               
Cow position:
               
chrX:9416930-9416545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
70-447
               

               
Cow position:
               
chrX:9635418-9635052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
70-449
               

               
Cow position:
               
chrX:45598841-45598464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
70-471
               

               
Cow position:
               
chrX:6690485-6690099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
70-492
               

               
Cow position:
               
chrX:17631039-17630618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
71-268
               

               
Cow position:
               
chrX:2206780-2206588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
71-286
               

               
Cow position:
               
chrX:25411604-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
71-304
               

               
Cow position:
               
chrX:8682166-8681929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
71-408
               

               
Cow position:
               
chrX:38935045-38935379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
71-419
               

               
Cow position:
               
chrX:42499265-42498938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
71-420
               

               
Cow position:
               
chrX:23514254-23513905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
71-421
               

               
Cow position:
               
chrX:21004448-21004797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
71-434
               

               
Cow position:
               
chrX:1514640-1514293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
71-434
               

               
Cow position:
               
chrX:11455288-11454923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 98
               

               
Conread position:
               
71-443
               

               
Cow position:
               
chrX:619244-618874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
71-448
               

               
Cow position:
               
chrX:16416272-16416639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
103, 155
               

               
Conread position:
               
71-449
               

               
Cow position:
               
chrX:34543551-34543925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
71-449
               

               
Cow position:
               
chrX:38549212-38549588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
71-451
               

               
Cow position:
               
chrX:33493539-33493919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 152
               

               
Conread position:
               
71-451
               

               
Cow position:
               
chrX:44961511-44961894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 128
               

               
Conread position:
               
71-485
               

               
Cow position:
               
chrX:24132387-24131976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
71-499
               

               
Cow position:
               
chrX:31340467-31340901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
71-505
               

               
Cow position:
               
chrX:6203319-6203738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:6563276-6563717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:7425228-7425665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:15305524-15305096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:39558584-39558163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:39938753-39938318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:40692974-40692552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chrX:42011044-42011481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 154
               

               
Conread position:
               
72-449
               

               
Cow position:
               
chrX:32623348-32623711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
72-506
               

               
Cow position:
               
chrX:11856194-11856620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
73-434
               

               
Cow position:
               
chrX:47054761-47054399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
73-449
               

               
Cow position:
               
chrX:27394248-27393885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
73-449
               

               
Cow position:
               
chrX:30963106-30962735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
73-451
               

               
Cow position:
               
chrX:13382090-13382468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 240
               

               
Conread position:
               
73-459
               

               
Cow position:
               
chrX:4865015-4865380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 103
               

               
Conread position:
               
73-502
               

               
Cow position:
               
chrX:37119365-37119789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:19930421-19930843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 149
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:30421173-30420747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 159
               

               
Conread position:
               
74-400
               

               
Cow position:
               
chrX:12405602-12405290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
74-447
               

               
Cow position:
               
chrX:3130348-3130711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
75-508
               

               
Cow position:
               
chrX:29120828-29121241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 14
               

               
Conread position:
               
76-302
               

               
Cow position:
               
chrX:37048812-37048581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chrX:10373077-10373310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
77-364
               

               
Cow position:
               
chrX:16790067-16789803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
77-396
               

               
Cow position:
               
chrX:15814867-15815171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
77-432
               

               
Cow position:
               
chrX:22821817-22822169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
77-432
               

               
Cow position:
               
chrX:37910223-37910569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
77-447
               

               
Cow position:
               
chrX:38642030-38642388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chrX:5900227-5900603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chrX:6278736-6278357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 229
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chrX:9201317-9201689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 147
               

               
Conread position:
               
77-451
               

               
Cow position:
               
chrX:35542661-35543030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
77-460
               

               
Cow position:
               
chrX:36975719-36976103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
25, 198
               

               
Conread position:
               
77-508
               

               
Cow position:
               
chrX:18456162-18456600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
77-508
               

               
Cow position:
               
chrX:22624251-22624680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chrX:11589821-11589513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
78-508
               

               
Cow position:
               
chrX:21664952-21664525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chrX:14900949-14900652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
79-482
               

               
Cow position:
               
chrX:32431399-32431798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
80-423
               

               
Cow position:
               
chrX:29032190-29032525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
163, 33
               

               
Conread position:
               
81-434
               

               
Cow position:
               
chrX:44396789-44397135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
83-451
               

               
Cow position:
               
chrX:18287279-18286934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
83-491
               

               
Cow position:
               
chrX:17042466-17042865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 141
               

               
Conread position:
               
84-434
               

               
Cow position:
               
chrX:6265809-6265473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
87-487
               

               
Cow position:
               
chrX:39126118-39126505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 80
               

               
Conread position:
               
89-370
               

               
Cow position:
               
chrX:36961418-36961702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 215
               

               
Conread position:
               
89-434
               

               
Cow position:
               
chrX:23091663-23091997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
89-443
               

               
Cow position:
               
chrX:48236593-48236952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
89-447
               

               
Cow position:
               
chrX:11633460-11633821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 221
               

               
Conread position:
               
89-449
               

               
Cow position:
               
chrX:36283127-36283480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 213
               

               
Conread position:
               
89-508
               

               
Cow position:
               
chrX:1503121-1503527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
89-508
               

               
Cow position:
               
chrX:46073040-46072610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
91-440
               

               
Cow position:
               
chrX:28013656-28013310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
91-508
               

               
Cow position:
               
chrX:40567383-40567825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 167
               

               
Conread position:
               
92-357
               

               
Cow position:
               
chrX:20752044-20752303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
95-434
               

               
Cow position:
               
chrX:8869619-8869276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
95-449
               

               
Cow position:
               
chrX:43730427-43730083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
95-508
               

               
Cow position:
               
chrX:11614486-11614895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 202
               

               
Conread position:
               
96-347
               

               
Cow position:
               
chrX:28836108-28835865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
96-397
               

               
Cow position:
               
chrX:841947-842245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
96-506
               

               
Cow position:
               
chrX:8917642-8918031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
96-508
               

               
Cow position:
               
chrX:29542430-29542008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 126
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chrX:29509653-29509417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
8, 197
               

               
Conread position:
               
98-309
               

               
Cow position:
               
chrX:46315586-46315374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
98-434
               

               
Cow position:
               
chrX:45845886-45846227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 127
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chrX:12980039-12979693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 126
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chrX:29602040-29601687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 92
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chrX:34411631-34411987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
98-508
               

               
Cow position:
               
chrX:10959607-10959196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
99-434
               

               
Cow position:
               
chrX:32420011-32420337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
8, 183
               

               
Conread position:
               
99-449
               

               
Cow position:
               
chrX:45110447-45110797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
100-508
               

               
Cow position:
               
chrX:4826035-4825628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
105-448
               

               
Cow position:
               
chrX:37781318-37780969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 121
               

               
Conread position:
               
106-496
               

               
Cow position:
               
chrX:25571193-25570796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
244, 105
               

               
Conread position:
               
110-290
               

               
Cow position:
               
chrX:4091452-4091632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chrX:17908479-17908255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
110-397
               

               
Cow position:
               
chrX:43973363-43973633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
235, 70
               

               
Conread position:
               
110-449
               

               
Cow position:
               
chrX:29545075-29544736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 54
               

               
Conread position:
               
110-449
               

               
Cow position:
               
chrX:46587622-46587963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
110-504
               

               
Cow position:
               
chrX:43780048-43779649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
37, 190
               

               
Conread position:
               
110-508
               

               
Cow position:
               
chrX:1499474-1499874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
112-322
               

               
Cow position:
               
chrX:45874805-45875010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
112-449
               

               
Cow position:
               
chrX:31311832-31312170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
113-507
               

               
Cow position:
               
chrX:33000711-33001117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
74, 89
               

               
Conread position:
               
115-426
               

               
Cow position:
               
chrX:44657155-44656839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
115-432
               

               
Cow position:
               
chrX:23785463-23785770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 136
               

               
Conread position:
               
115-449
               

               
Cow position:
               
chrX:3489075-3488750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
233, 37
               

               
Conread position:
               
115-449
               

               
Cow position:
               
chrX:4515477-4515832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
32, 206
               

               
Conread position:
               
116-279
               

               
Cow position:
               
chrX:24149450-24149614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
117-397
               

               
Cow position:
               
chrX:40809498-40809781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 178
               

               
Conread position:
               
117-447
               

               
Cow position:
               
chrX:42235722-42235385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chrX:48035241-48035488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
123-307
               

               
Cow position:
               
chrX:14003828-14003641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
123-449
               

               
Cow position:
               
chrX:32820847-32821169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
124-434
               

               
Cow position:
               
chrX:7336645-7336967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
126-302
               

               
Cow position:
               
chrX:30005089-30005262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
127-505
               

               
Cow position:
               
chrX:16514443-16514078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
128-447
               

               
Cow position:
               
chrX:29680438-29680122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
131-449
               

               
Cow position:
               
chrX:27227951-27228268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
132-370
               

               
Cow position:
               
chrX:46146734-46146500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 63
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chrX:35885903-35885513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
97, 153
               

               
Conread position:
               
133-447
               

               
Cow position:
               
chrX:46433310-46433630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
133-449
               

               
Cow position:
               
chrX:31252245-31252548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
133-455
               

               
Cow position:
               
chrX:6407376-6407690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
133-507
               

               
Cow position:
               
chrX:38999671-39000047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
134-440
               

               
Cow position:
               
chrX:4279286-4278986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
134-449
               

               
Cow position:
               
chrX:37955666-37955988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
134-451
               

               
Cow position:
               
chrX:34792482-34792170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
144-452
               

               
Cow position:
               
chrX:41068566-41068869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
201, 20
               

               
Conread position:
               
145-508
               

               
Cow position:
               
chrX:4398970-4399338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
200, 16
               

               
Conread position:
               
146-448
               

               
Cow position:
               
chrX:8917238-8917532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
202, 15
               

               
Conread position:
               
147-507
               

               
Cow position:
               
chrX:23666964-23667315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 156
               

               
Conread position:
               
148-300
               

               
Cow position:
               
chrX:33590570-33590724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
155-341
               

               
Cow position:
               
chrX:34993989-34994162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
156-451
               

               
Cow position:
               
chrX:5680084-5679788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
156-508
               

               
Cow position:
               
chrX:6041359-6041014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
157-440
               

               
Cow position:
               
chrX:14955917-14955637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chrX:9365822-9365536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
191, 21
               

               
Conread position:
               
157-508
               

               
Cow position:
               
chrX:39415518-39415170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
160-394
               

               
Cow position:
               
chrX:29723596-29723825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
188, 138
               

               
Conread position:
               
161-440
               

               
Cow position:
               
chrX:11085201-11084932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 119
               

               
Conread position:
               
164-508
               

               
Cow position:
               
chrX:19878909-19879236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
166-449
               

               
Cow position:
               
chrX:22387382-22387109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
231, 130
               

               
Conread position:
               
166-508
               

               
Cow position:
               
chrX:47178017-47178342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
263, 66
               

               
Conread position:
               
167-432
               

               
Cow position:
               
chrX:45976782-45977050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 147
               

               
Conread position:
               
169-434
               

               
Cow position:
               
chrX:19273859-19273581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
172-346
               

               
Cow position:
               
chrX:36723224-36723053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
172-388
               

               
Cow position:
               
chrX:27450132-27449919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
172-455
               

               
Cow position:
               
chrX:41027024-41027306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
172-457
               

               
Cow position:
               
chrX:34315397-34315669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
173, 14
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chrX:41870938-41871277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
173-404
               

               
Cow position:
               
chrX:5919364-5919588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
176, 46
               

               
Conread position:
               
173-427
               

               
Cow position:
               
chrX:21566270-21566526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
173-447
               

               
Cow position:
               
chrX:40685463-40685189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chrX:20584192-20584532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
175-419
               

               
Cow position:
               
chrX:45875261-45875503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
176-447
               

               
Cow position:
               
chrX:38728608-38728873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
176-449
               

               
Cow position:
               
chrX:7710672-7710398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
181-400
               

               
Cow position:
               
chrX:27946183-27945963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
181-505
               

               
Cow position:
               
chrX:18142579-18142263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
61, 40
               

               
Conread position:
               
182-379
               

               
Cow position:
               
chrX:20790798-20790983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
182-469
               

               
Cow position:
               
chrX:6656263-6656543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
158, 38
               

               
Conread position:
               
183-447
               

               
Cow position:
               
chrX:38654552-38654302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
184-372
               

               
Cow position:
               
chrX:35848439-35848627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
187-449
               

               
Cow position:
               
chrX:26881686-26881423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
162, 32
               

               
Conread position:
               
191-508
               

               
Cow position:
               
chrX:23940139-23939854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 29
               

               
Conread position:
               
192-449
               

               
Cow position:
               
chrX:24331665-24331917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
193-451
               

               
Cow position:
               
chrX:34222598-34222857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
196-397
               

               
Cow position:
               
chrX:17949599-17949405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
196-451
               

               
Cow position:
               
chrX:29194125-29194373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
200, 23
               

               
Conread position:
               
197-393
               

               
Cow position:
               
chrX:47657276-47657470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
198-384
               

               
Cow position:
               
chrX:13136337-13136157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
150, 14
               

               
Conread position:
               
201-440
               

               
Cow position:
               
chrX:31515065-31515306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
203-446
               

               
Cow position:
               
chrX:16348672-16348434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
204-449
               

               
Cow position:
               
chrX:21327802-21328054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
205-412
               

               
Cow position:
               
chrX:25441091-25440894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chrX:19162437-19162201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chrX:29549644-29549412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chrX:12095870-12095631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
136, 80
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chrX:20168461-20168698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
209-449
               

               
Cow position:
               
chrX:37129172-37129410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
209-508
               

               
Cow position:
               
chrX:19678363-19678080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chrX:1572228-1572051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 81
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chrX:7344994-7345208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
220-451
               

               
Cow position:
               
chrX:36514980-36514750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 81
               

               
Conread position:
               
223-426
               

               
Cow position:
               
chrX:36866088-36866290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 68
               

               
Conread position:
               
224-449
               

               
Cow position:
               
chrX:40680529-40680755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
224-469
               

               
Cow position:
               
chrX:27261106-27261353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
224-508
               

               
Cow position:
               
chrX:20882019-20881741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
225-427
               

               
Cow position:
               
chrX:13121851-13122057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
225-448
               

               
Cow position:
               
chrX:41271079-41270846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
225-449
               

               
Cow position:
               
chrX:4109110-4109325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
225-449
               

               
Cow position:
               
chrX:17966258-17966482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
225-506
               

               
Cow position:
               
chrX:26619189-26618920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
226-443
               

               
Cow position:
               
chrX:22115397-22115182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
227-443
               

               
Cow position:
               
chrX:39220001-39220214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
227-447
               

               
Cow position:
               
chrX:169627-169407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chrX:23113199-23113426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chrX:23562556-23562773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
227-452
               

               
Cow position:
               
chrX:42855376-42855602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
227-473
               

               
Cow position:
               
chrX:22326039-22326284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
229-485
               

               
Cow position:
               
chrX:39339185-39338927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chrX:23561786-23561992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
232-447
               

               
Cow position:
               
chrX:19097296-19097080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
243-448
               

               
Cow position:
               
chrX:15820534-15820734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
243-449
               

               
Cow position:
               
chrX:25036924-25037128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
243-451
               

               
Cow position:
               
chrX:126706-126910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
248-449
               

               
Cow position:
               
chrX:10516192-10516394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chrX:32978134-32977943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
250-447
               

               
Cow position:
               
chrX:22915092-22914903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
250-448
               

               
Cow position:
               
chrX:2003932-2003736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
250-506
               

               
Cow position:
               
chrX:27771631-27771380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
250-508
               

               
Cow position:
               
chrX:39352724-39352992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
251-451
               

               
Cow position:
               
chrX:46429875-46429676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
251-455
               

               
Cow position:
               
chrX:44339379-44339178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
254-446
               

               
Cow position:
               
chrX:18964876-18964691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
254-504
               

               
Cow position:
               
chrX:29408077-29407828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chrX:43426240-43426487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
257-482
               

               
Cow position:
               
chrX:7806376-7806598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chrX:22393034-22392858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
258-447
               

               
Cow position:
               
chrX:19943285-19943097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
258-504
               

               
Cow position:
               
chrX:15233315-15233072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
138, 38
               

               
Conread position:
               
258-508
               

               
Cow position:
               
chrX:34356015-34355776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
258-508
               

               
Cow position:
               
chrX:46083924-46084172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
261-449
               

               
Cow position:
               
chrX:40532087-40531902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
261-450
               

               
Cow position:
               
chrX:4645957-4645771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
261-470
               

               
Cow position:
               
chrX:9839181-9839385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
267-451
               

               
Cow position:
               
chrX:29553246-29553428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
268-448
               

               
Cow position:
               
chrX:42893879-42894066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
268-508
               

               
Cow position:
               
chrX:4289401-4289654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
271-443
               

               
Cow position:
               
chrX:17956660-17956825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
272-397
               

               
Cow position:
               
chrX:8097464-8097340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
272-451
               

               
Cow position:
               
chrX:27413476-27413654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
274-501
               

               
Cow position:
               
chrX:35759971-35759743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chrX:10305379-10305209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
281-449
               

               
Cow position:
               
chrX:20743577-20743745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
285-449
               

               
Cow position:
               
chrX:25411886-25412046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
289-448
               

               
Cow position:
               
chrX:32910085-32910239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
289-449
               

               
Cow position:
               
chrX:42282559-42282717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chrX:11763022-11762791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chrX:27276676-27276897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
299-449
               

               
Cow position:
               
chrX:18046390-18046537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
301-508
               

               
Cow position:
               
chrX:35278321-35278530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
302-452
               

               
Cow position:
               
chrX:23188787-23188640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
302-508
               

               
Cow position:
               
chrX:3806673-3806898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
303-448
               

               
Cow position:
               
chrX:35383041-35382897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
304-448
               

               
Cow position:
               
chrX:29733600-29733452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
304-452
               

               
Cow position:
               
chrX:27075057-27074907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
305-508
               

               
Cow position:
               
chrX:24054666-24054881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
307-505
               

               
Cow position:
               
chrX:8780042-8780240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
307-507
               

               
Cow position:
               
chrX:4466964-4467170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
307-508
               

               
Cow position:
               
chrX:38722118-38722317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
308-499
               

               
Cow position:
               
chrX:46070174-46069974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
310-449
               

               
Cow position:
               
chrX:27668958-27668817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chrX:31745003-31744795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
320-446
               

               
Cow position:
               
chrX:37665701-37665826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
326-499
               

               
Cow position:
               
chrX:12304577-12304751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
327-508
               

               
Cow position:
               
chrX:46700830-46700650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
334-508
               

               
Cow position:
               
chrX:39832438-39832612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
340-506
               

               
Cow position:
               
chrX:28835732-28835561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 155
               

               
Conread position:
               
346-508
               

               
Cow position:
               
chrX:6676863-6677026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
346-508
               

               
Cow position:
               
chrX:16291982-16291818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chrX:2551129-2551297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
348-508
               

               
Cow position:
               
chrX:1727934-1727771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
357-508
               

               
Cow position:
               
chrX:37140517-37140668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 58
               
Show alignments to all cow chromosomes.