Cow genome map
| Conread name: | rpldo0109_b3.y1 |
| Conread position: | 42-282 |
| Cow position: | chr1:22778097-22777861 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 59-285 |
| Cow position: | chr1:50931784-50931579 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 59-285 |
| Cow position: | chr1:72790655-72790869 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 59-299 |
| Cow position: | chr1:25856184-25856412 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 59-346 |
| Cow position: | chr1:24561974-24561711 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 230, 49 |
| Conread position: | 59-375 |
| Cow position: | chr1:60280611-60280915 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 270, 63 |
| Conread position: | 59-387 |
| Cow position: | chr1:92433542-92433853 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 59-387 |
| Cow position: | chr1:101634221-101634536 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 53 |
| Conread position: | 59-388 |
| Cow position: | chr1:9111493-9111165 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 112, 63 |
| Conread position: | 59-388 |
| Cow position: | chr1:24571359-24571054 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 230, 49 |
| Conread position: | 59-388 |
| Cow position: | chr1:39069450-39069115 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 59-392 |
| Cow position: | chr1:3340443-3340778 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 59-392 |
| Cow position: | chr1:30034072-30034386 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 57 |
| Conread position: | 59-392 |
| Cow position: | chr1:54933709-54934035 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 28 |
| Conread position: | 60-300 |
| Cow position: | chr1:95050625-95050397 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 60-388 |
| Cow position: | chr1:84240428-84240735 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 60 |
| Conread position: | 61-329 |
| Cow position: | chr1:26811291-26811023 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 107, 61 |
| Conread position: | 61-388 |
| Cow position: | chr1:37309993-37309675 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 61-388 |
| Cow position: | chr1:38418597-38418911 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 58 |
| Conread position: | 61-392 |
| Cow position: | chr1:79590621-79590941 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 51 |
| Conread position: | 61-392 |
| Cow position: | chr1:79843993-79844309 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 14 |
| Conread position: | 61-392 |
| Cow position: | chr1:86597335-86597658 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 227, 52 |
| Conread position: | 62-299 |
| Cow position: | chr1:60554350-60554125 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 62-307 |
| Cow position: | chr1:19883834-19883594 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 62-388 |
| Cow position: | chr1:56718839-56719152 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 56 |
| Conread position: | 62-392 |
| Cow position: | chr1:11226721-11226405 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 45 |
| Conread position: | 63-364 |
| Cow position: | chr1:98618441-98618728 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 49 |
| Conread position: | 64-385 |
| Cow position: | chr1:71797369-71797067 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 54 |
| Conread position: | 65-293 |
| Cow position: | chr1:93111129-93110913 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 65-323 |
| Cow position: | chr1:76095745-76095992 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 65-392 |
| Cow position: | chr1:42053796-42053483 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 48 |
| Conread position: | 66-240 |
| Cow position: | chr1:13762071-13761901 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 66-388 |
| Cow position: | chr1:7790023-7789718 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 223, 47 |
| Conread position: | 66-388 |
| Cow position: | chr1:77762168-77762493 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 49 |
| Conread position: | 67-388 |
| Cow position: | chr1:12871494-12871171 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 68-298 |
| Cow position: | chr1:522804-523015 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 221, 54 |
| Conread position: | 70-385 |
| Cow position: | chr1:99642827-99642537 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 260, 48 |
| Conread position: | 73-388 |
| Cow position: | chr1:100816078-100816377 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 135-388 |
| Cow position: | chr1:51983184-51983423 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 135-392 |
| Cow position: | chr1:101551035-101551298 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 136-388 |
| Cow position: | chr1:78586435-78586182 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 152, 93 |
| Conread position: | 157-388 |
| Cow position: | chr1:58889690-58889460 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 132, 97 |
Show alignments to all cow chromosomes.