Cow genome map
| Conread name: | rpldo0109_b3.y1 |
| Conread position: | 47-392 |
| Cow position: | chr4:19584190-19584531 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 58-379 |
| Cow position: | chr4:68944670-68944363 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 54 |
| Conread position: | 58-388 |
| Cow position: | chr4:24119409-24119087 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 68 |
| Conread position: | 59-267 |
| Cow position: | chr4:35940488-35940296 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 59-274 |
| Cow position: | chr4:23508787-23508984 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 59-287 |
| Cow position: | chr4:20298740-20298954 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 178, 63 |
| Conread position: | 59-297 |
| Cow position: | chr4:21364706-21364945 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 59-299 |
| Cow position: | chr4:61066134-61066359 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 59-311 |
| Cow position: | chr4:19493024-19493264 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 59-386 |
| Cow position: | chr4:8120658-8120344 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 59-388 |
| Cow position: | chr4:3475121-3475453 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 59-388 |
| Cow position: | chr4:10992701-10992381 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 59-388 |
| Cow position: | chr4:11091173-11090865 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 59-388 |
| Cow position: | chr4:13877700-13878014 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 59-390 |
| Cow position: | chr4:25369620-25369940 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 59-392 |
| Cow position: | chr4:37620386-37620061 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 59 |
| Conread position: | 59-392 |
| Cow position: | chr4:56409673-56410008 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 60-371 |
| Cow position: | chr4:10837854-10837550 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 121, 53 |
| Conread position: | 60-384 |
| Cow position: | chr4:54190616-54190912 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 61-295 |
| Cow position: | chr4:59106396-59106161 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 61-388 |
| Cow position: | chr4:5777535-5777208 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 61-388 |
| Cow position: | chr4:18255373-18255685 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 61 |
| Conread position: | 61-388 |
| Cow position: | chr4:18519219-18519549 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 61-388 |
| Cow position: | chr4:34166458-34166153 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 61-390 |
| Cow position: | chr4:13143014-13142708 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 61-392 |
| Cow position: | chr4:67444638-67444970 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 65-286 |
| Cow position: | chr4:27287639-27287428 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 65-312 |
| Cow position: | chr4:37691909-37691683 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 224, 37 |
| Conread position: | 65-378 |
| Cow position: | chr4:18973955-18974244 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 65-386 |
| Cow position: | chr4:53134117-53134431 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 65-386 |
| Cow position: | chr4:57555472-57555786 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 224, 57 |
| Conread position: | 65-388 |
| Cow position: | chr4:25972406-25972719 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 48 |
| Conread position: | 65-388 |
| Cow position: | chr4:58834892-58834584 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 65-392 |
| Cow position: | chr4:20328200-20327889 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 65-392 |
| Cow position: | chr4:38998946-38999253 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 66-313 |
| Cow position: | chr4:8674199-8674432 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 223, 37 |
| Conread position: | 66-383 |
| Cow position: | chr4:3893241-3893545 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 67-392 |
| Cow position: | chr4:5610554-5610248 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 53 |
| Conread position: | 77-392 |
| Cow position: | chr4:53999995-53999680 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 43 |
| Conread position: | 131-389 |
| Cow position: | chr4:25889287-25889010 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 135-388 |
| Cow position: | chr4:22115158-22115428 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 154, 85 |
| Conread position: | 135-388 |
| Cow position: | chr4:22138663-22138414 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 29 |
| Conread position: | 135-388 |
| Cow position: | chr4:69017939-69018189 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 154, 23 |
Show alignments to all cow chromosomes.