Cow genome map
| Conread name: | rpldo0109_b3.y1 |
| Conread position: | 48-392 |
| Cow position: | chr5:2333004-2332654 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 58-388 |
| Cow position: | chr5:62436683-62437002 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 71 |
| Conread position: | 58-388 |
| Cow position: | chr5:69099044-69099383 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 64 |
| Conread position: | 59-284 |
| Cow position: | chr5:53835235-53835443 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 59-284 |
| Cow position: | chr5:54110761-54110990 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 161 |
| Conread position: | 59-285 |
| Cow position: | chr5:63457008-63456799 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 59-303 |
| Cow position: | chr5:43991824-43992064 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 59-370 |
| Cow position: | chr5:59303742-59303432 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 59-382 |
| Cow position: | chr5:55176426-55176735 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 52 |
| Conread position: | 59-384 |
| Cow position: | chr5:44848474-44848166 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 59-388 |
| Cow position: | chr5:14630368-14630052 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 61 |
| Conread position: | 59-388 |
| Cow position: | chr5:15088725-15089041 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 240, 59 |
| Conread position: | 59-388 |
| Cow position: | chr5:16894229-16893921 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 59-392 |
| Cow position: | chr5:34638433-34638745 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 53 |
| Conread position: | 60-376 |
| Cow position: | chr5:1054813-1054500 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 79 |
| Conread position: | 60-388 |
| Cow position: | chr5:10261702-10261384 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 50 |
| Conread position: | 61-293 |
| Cow position: | chr5:42727249-42727033 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 228, 57 |
| Conread position: | 61-328 |
| Cow position: | chr5:24485872-24485620 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 61-342 |
| Cow position: | chr5:7721797-7722079 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 61-359 |
| Cow position: | chr5:17645345-17645067 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 51 |
| Conread position: | 61-362 |
| Cow position: | chr5:25231466-25231184 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 53 |
| Conread position: | 61-370 |
| Cow position: | chr5:4348145-4347877 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 61-386 |
| Cow position: | chr5:8024651-8024340 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 61-388 |
| Cow position: | chr5:23141035-23140718 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 51 |
| Conread position: | 61-388 |
| Cow position: | chr5:38831448-38831139 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 59 |
| Conread position: | 61-388 |
| Cow position: | chr5:51151819-51151508 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 52 |
| Conread position: | 61-392 |
| Cow position: | chr5:41532647-41532310 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 61-392 |
| Cow position: | chr5:55942855-55942538 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 61 |
| Conread position: | 62-358 |
| Cow position: | chr5:56442825-56443098 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 146, 54 |
| Conread position: | 62-364 |
| Cow position: | chr5:55233226-55232953 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 227, 59 |
| Conread position: | 62-392 |
| Cow position: | chr5:28247720-28248036 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 54 |
| Conread position: | 62-392 |
| Cow position: | chr5:45025600-45025276 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 49 |
| Conread position: | 62-392 |
| Cow position: | chr5:59082649-59082336 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 51 |
| Conread position: | 65-367 |
| Cow position: | chr5:45941088-45940772 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 65-385 |
| Cow position: | chr5:27010835-27011145 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 65-388 |
| Cow position: | chr5:6129902-6130207 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 57 |
| Conread position: | 65-388 |
| Cow position: | chr5:46611558-46611231 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 67-313 |
| Cow position: | chr5:51858737-51858500 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 67-392 |
| Cow position: | chr5:16508634-16508950 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 69-388 |
| Cow position: | chr5:54405345-54405041 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 49 |
| Conread position: | 73-327 |
| Cow position: | chr5:46653448-46653696 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 215, 40 |
| Conread position: | 77-301 |
| Cow position: | chr5:60752534-60752321 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 132-270 |
| Cow position: | chr5:24996853-24996719 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 132-388 |
| Cow position: | chr5:55684725-55684982 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 135-297 |
| Cow position: | chr5:15425849-15426009 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 135-389 |
| Cow position: | chr5:48224971-48224719 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 169, 99 |
| Conread position: | 135-392 |
| Cow position: | chr5:41936189-41935939 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 23 |
Show alignments to all cow chromosomes.